#504 closed misbehavior (fixed)
external aligners complain about changed sequence checksums
Reported by: | westram | Owned by: | westram |
---|---|---|---|
Priority: | normal | Milestone: | arb7.0 |
Component: | External_tools | Version: | SVN |
Keywords: | Cc: |
Description (last modified by westram)
Reproduce:
- start demo.arb
- call
- Sequence/Align?/ClustalW fast or
- Sequence/Align?/mafft
- go
- when reimporting asks, select 'overwrite sequence only'
⇒ warns about sequence checksum change
Warning is caused by aligner changing all 'U' into 'T'
in case of RNA alignment, revert that change before calculating checksumby [12821]be more severe on that warning, making clear that the sequence data was modified, not some gaps or sthby [12821]
Related TODOs:
Change History (10)
comment:1 Changed 10 years ago by westram
- Description modified (diff)
- Summary changed from clustalW complains about changed sequence checksums to external aligners complain about changed sequence checksums
comment:2 Changed 10 years ago by westram
- Description modified (diff)
comment:3 Changed 10 years ago by westram
- Owner changed from devel to westram
- Status changed from new to _started
comment:4 Changed 10 years ago by westram
- Description modified (diff)
comment:5 Changed 10 years ago by westram
- Description modified (diff)
comment:6 Changed 10 years ago by westram
- Description modified (diff)
comment:7 Changed 10 years ago by westram
- Description modified (diff)
comment:8 Changed 10 years ago by westram
- Description modified (diff)
comment:9 in reply to: ↑ description Changed 10 years ago by westram
- Resolution set to fixed
- Status changed from _started to closed
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by [12834]
will be (implicitly) implemented by #595