EDIT4 crashes using arrow keys in Mavericks (OS 10.9.2)

[guest]

Hi,

I have just installed the new Arb on a MacPro (OS 10.9.2), and the editor crashes as soon as you try to use the alt-arrow keys. It's happened to at least two with three databases (two large 16S, one small amino acid). One of the backtraces is copied below.

Thanks,

Barbara MacGregor

Last login: Thu May  1 10:35:06 on ttys000
mid-campus-02512:~ bmacgreg$ sudo pico .Xmodmap
Password:
mid-campus-02512:~ bmacgreg$ arb
Ignoring set ARBHOME '/opt/local/share/arb' (overridden by explicit call of '/opt/local/bin/arb')
Using ARBHOME='/opt/local/share/arb'
Using properties from /Users/bmacgreg/.arb_prop
Please wait while the program ARB is starting .....
Waiting for '/Users/bmacgreg/.arb_tmp/sockets/arb_launcher.85200'..
[arb_launcher[0]: Starting 'arb_ntree'..]
Using properties from '/opt/local/share/arb/lib/arb_default/ntree.arb'
Using properties from '/opt/local/share/arb/lib/arb_default/status.arb'
ARB: Loading 'ntree.arb'
ARB: Loading '/opt/local/share/arb/lib/arb_default/ntree.arb' done

ARB: ARB: Loading '/Users/bmacgreg/Documents/XisH_XisI/XisH.arb'
ARB: ARB: no FastLoad File '/Users/bmacgreg/Documents/XisH_XisI/XisH.ARM' found => loading entire DB
ARB: ARB: Loading '/Users/bmacgreg/Documents/XisH_XisI/XisH.arb' done

[Action: 'arb_edit4 -c default_configuration &']
Using properties from '/opt/local/share/arb/lib/arb_default/status.arb'
Using properties from '/opt/local/share/arb/lib/arb_default/edit4.arb'
Note: SINA (SILVA Aligner) disabled (Reason: sina not found)
      Visit http://www.ribocon.com/sina/ for more information.

-------------------- ARB-backtrace 'received signal 11':
0   arb_edit4                           0x000000010083ae31 _ZL15sigsegv_handleri + 81
1   libsystem_platform.dylib            0x00007fff8ecc75aa _sigtramp + 26
2   ???                                 0x0000000101201e00 0x0 + 4313849344
3   arb_edit4                           0x000000010074e1db _ZN12ED4_terminal19changed_by_databaseEv + 283
4   arb_edit4                           0x0000000100810d85 _ZN12GB_MAIN_TYPE22call_pending_callbacksEv + 229
5   arb_edit4                           0x0000000100835a0a _ZN12GB_MAIN_TYPE18commit_transactionEv + 474
6   arb_edit4                           0x000000010081525b _Z29GB_end_transaction_show_errorP6GBDATAPKcPFvS2_E + 91
7   arb_edit4                           0x0000000100769b5e _ZL16executeKeystrokeP8AW_eventi + 942
8   arb_edit4                           0x0000000100769d5c _Z12ED4_input_cbP9AW_window + 332
9   arb_edit4                           0x000000010086fbaf _ZN5AW_cb13run_callbacksEv + 191
10  libXt.6.dylib                       0x0000000100d90592 XtCallCallbackList + 128
11  libXm.4.dylib                       0x0000000100abed08 _XmDrawingAreaInput + 288
12  libXt.6.dylib                       0x0000000100dbf569 HandleActions + 229
13  libXt.6.dylib                       0x0000000100dbd67d HandleSimpleState + 917
14  libXt.6.dylib                       0x0000000100dbd21d _XtTranslateEvent + 1502
15  libXt.6.dylib                       0x0000000100d9c13e XtDispatchEventToWidget + 1395
16  libXt.6.dylib                       0x0000000100d9c771 _XtDefaultDispatcher + 861
17  libXt.6.dylib                       0x0000000100d9c347 XtDispatchEvent + 267
18  libXt.6.dylib                       0x0000000100da684e XtAppProcessEvent + 671
19  libXt.6.dylib                       0x0000000100d9cb11 XtAppMainLoop + 44
20  arb_edit4                           0x000000010075dc46 _Z8ARB_mainiPPc + 3318
21  libdyld.dylib                       0x00007fff89e6c5fd start + 1
22  ???                                 0x0000000000000003 0x0 + 3
-------------------- End of backtrace
[Terminating with signal 11]

[westram]

Reproduce under Linux using valgrind:

• run

  cd $ARBHOME;arb_valgrind -l -c 15 arb_edit4 $ARBHOME/demo.arb
  

• pull-base or insert a base

Note: possibly related code-comments:

• source:trunk/EDIT4/ED4_cursor.cxx#L1486​
• source:trunk/EDIT4/ED4_base.cxx#L71​

[westram]

by [12157]

[westram]

quoting matt:

arb_gtk r12182 crashes when I close the editor window.

[westram]

arb_gtk r12182 crashes when I close the editor window.

wrong quote.. right fix [12260]