Opened 5 years ago

Closed 5 years ago

Last modified 5 years ago

#529 closed defect (fixed)

EDIT4 crashes using arrow keys in Mavericks (OS 10.9.2)

Reported by: guest Owned by: westram
Priority: major Milestone: arb6
Component: ARB_EDIT4 Version: arb-6.0-rc1
Keywords: Cc:

Description (last modified by westram)

Hi,

I have just installed the new Arb on a MacPro (OS 10.9.2), and the editor crashes as soon as you try to use the alt-arrow keys. It's happened to at least two users with three databases (two large 16S, one small amino acid). One of the backtraces is copied below.

Thanks,

Barbara MacGregor

Last login: Thu May  1 10:35:06 on ttys000
mid-campus-02512:~ bmacgreg$ sudo pico .Xmodmap
Password:
mid-campus-02512:~ bmacgreg$ arb
Ignoring set ARBHOME '/opt/local/share/arb' (overridden by explicit call of '/opt/local/bin/arb')
Using ARBHOME='/opt/local/share/arb'
Using properties from /Users/bmacgreg/.arb_prop
Please wait while the program ARB is starting .....
Waiting for '/Users/bmacgreg/.arb_tmp/sockets/arb_launcher.85200'..
[arb_launcher[0]: Starting 'arb_ntree'..]
Using properties from '/opt/local/share/arb/lib/arb_default/ntree.arb'
Using properties from '/opt/local/share/arb/lib/arb_default/status.arb'
ARB: Loading 'ntree.arb'
ARB: Loading '/opt/local/share/arb/lib/arb_default/ntree.arb' done

ARB: ARB: Loading '/Users/bmacgreg/Documents/XisH_XisI/XisH.arb'
ARB: ARB: no FastLoad File '/Users/bmacgreg/Documents/XisH_XisI/XisH.ARM' found => loading entire DB
ARB: ARB: Loading '/Users/bmacgreg/Documents/XisH_XisI/XisH.arb' done

[Action: 'arb_edit4 -c default_configuration &']
Using properties from '/opt/local/share/arb/lib/arb_default/status.arb'
Using properties from '/opt/local/share/arb/lib/arb_default/edit4.arb'
Note: SINA (SILVA Aligner) disabled (Reason: sina not found)
      Visit http://www.ribocon.com/sina/ for more information.

-------------------- ARB-backtrace 'received signal 11':
0   arb_edit4                           0x000000010083ae31 _ZL15sigsegv_handleri + 81
1   libsystem_platform.dylib            0x00007fff8ecc75aa _sigtramp + 26
2   ???                                 0x0000000101201e00 0x0 + 4313849344
3   arb_edit4                           0x000000010074e1db _ZN12ED4_terminal19changed_by_databaseEv + 283
4   arb_edit4                           0x0000000100810d85 _ZN12GB_MAIN_TYPE22call_pending_callbacksEv + 229
5   arb_edit4                           0x0000000100835a0a _ZN12GB_MAIN_TYPE18commit_transactionEv + 474
6   arb_edit4                           0x000000010081525b _Z29GB_end_transaction_show_errorP6GBDATAPKcPFvS2_E + 91
7   arb_edit4                           0x0000000100769b5e _ZL16executeKeystrokeP8AW_eventi + 942
8   arb_edit4                           0x0000000100769d5c _Z12ED4_input_cbP9AW_window + 332
9   arb_edit4                           0x000000010086fbaf _ZN5AW_cb13run_callbacksEv + 191
10  libXt.6.dylib                       0x0000000100d90592 XtCallCallbackList + 128
11  libXm.4.dylib                       0x0000000100abed08 _XmDrawingAreaInput + 288
12  libXt.6.dylib                       0x0000000100dbf569 HandleActions + 229
13  libXt.6.dylib                       0x0000000100dbd67d HandleSimpleState + 917
14  libXt.6.dylib                       0x0000000100dbd21d _XtTranslateEvent + 1502
15  libXt.6.dylib                       0x0000000100d9c13e XtDispatchEventToWidget + 1395
16  libXt.6.dylib                       0x0000000100d9c771 _XtDefaultDispatcher + 861
17  libXt.6.dylib                       0x0000000100d9c347 XtDispatchEvent + 267
18  libXt.6.dylib                       0x0000000100da684e XtAppProcessEvent + 671
19  libXt.6.dylib                       0x0000000100d9cb11 XtAppMainLoop + 44
20  arb_edit4                           0x000000010075dc46 _Z8ARB_mainiPPc + 3318
21  libdyld.dylib                       0x00007fff89e6c5fd start + 1
22  ???                                 0x0000000000000003 0x0 + 3
-------------------- End of backtrace
[Terminating with signal 11]

Change History (7)

comment:1 Changed 5 years ago by westram

  • Description modified (diff)
  • Keywords arb-6.0-rc1.rev11977 OS 10.9.2 removed
  • Milestone set to arb6
  • Owner changed from devel to westram
  • Priority changed from normal to major
  • Status changed from new to _started
  • Version set to arb_6.0-rc1

Reproduce under Linux using valgrind:

  • run
    cd $ARBHOME;arb_valgrind -l -c 15 arb_edit4 $ARBHOME/demo.arb
    
  • pull-base or insert a base

Note: possibly related code-comments:

comment:2 Changed 5 years ago by westram

  • Description modified (diff)

comment:3 Changed 5 years ago by westram

  • Resolution set to fixed
  • Status changed from _started to closed

by [12157]

comment:4 follow-up: Changed 5 years ago by westram

  • Resolution fixed deleted
  • Status changed from closed to reopened

quoting matt:

arb_gtk r12182 crashes when I close the editor window.

comment:5 Changed 5 years ago by westram

  • Status changed from reopened to _started

comment:6 in reply to: ↑ 4 Changed 5 years ago by westram

  • Resolution set to fixed
  • Status changed from _started to closed

arb_gtk r12182 crashes when I close the editor window.

wrong quote.. right fix [12260]

comment:7 Changed 5 years ago by westram

  • Version changed from arb_6.0-rc1 to arb-6.0-rc1
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