Opened 10 years ago
#605 new misbehavior
add ambiguous partials next to inner nodes
Reported by: | westram | Owned by: | devel |
---|---|---|---|
Priority: | normal | Milestone: | |
Component: | ARB_PARSIMONY | Version: | SVN |
Keywords: | Cc: |
Description
When adding partial sequences, it often happens that multiple possible insert positions (PIP) are detected. This happens whenever the full-length sequences (considered for insertion) do not differ in the alignment region which is covered by the partial sequence.
Currently arb warns ("Insertion of '<name>' is ambiguous") and chooses the first ambiguous PIP.
Wanted behavior:
- if all PIPs form one subtree ⇒ insert partial as brother of that subtree
- if the PIPs spread all over the ⇒ reject insertion
- if sth inbetween ⇒ ???
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