Opened 7 years ago

Closed 3 years ago

Last modified 7 weeks ago

#614 closed enhancement (implemented)

Tweak display of (bootstrap) support values

Reported by: westram Owned by: westram
Priority: normal Milestone: arb7.0
Component: ARB_NTREE Version:
Keywords: Cc:

Description (last modified by westram)

arb uses the 'remark_branch' of tree-nodes to store

  • either plain textual remarks or
  • support-values (SVAL). SVALs of '100%' are not stored in tree

Wanted tree display:

  • allow to restrict range of displayed support values for (inner) nodes
  • allow display of 100% bootstraps
  • allow to show/hide bootstraps using toggle
  • allow to hide percent symbol

Problems:

  • trees w/o any SVALs should not display 100% at each branch
  • trees containing (some) support values shall display 100% at branches lacking support values
    (Note: zero support values are not possible; doesn't make sense!)

Display functions currently do not know whether SVALs occur in the tree or not. This fact has to be determined while loading tree from DB.

Note:

  • function to toggle 100% SVALs (as added with [11487]) is meaningless and can be removed
  • trees containing 100% SVALs (because someone used the above function) should automatically convert back to old format (e.g. when displayed first time in NTREE)

related: #759

Change History (15)

comment:1 follow-up: Changed 7 years ago by westram

see also [12989] and [12997]

comment:2 in reply to: ↑ 1 ; follow-up: Changed 6 years ago by westram

Replying to westram:

see also [12989] and [12997]

Bug: Value is ignored in radial treeview

comment:3 Changed 6 years ago by westram

  • Description modified (diff)

comment:4 Changed 5 years ago by westram

  • Description modified (diff)

comment:5 Changed 5 years ago by westram

  • Milestone set to proposals

comment:6 Changed 4 years ago by westram

  • Description modified (diff)

comment:7 Changed 4 years ago by westram

  • Milestone changed from proposals to wishlist

comment:8 Changed 3 years ago by westram

  • Owner changed from devel to westram
  • Status changed from new to accepted

comment:9 Changed 3 years ago by westram

  • Milestone changed from wishlist to r18

comment:10 Changed 3 years ago by westram

  • Status changed from accepted to _started

comment:11 in reply to: ↑ 2 Changed 3 years ago by westram

Replying to westram:

Bug: Value is ignored in radial treeview

Fixed by [17401] (./)

comment:12 Changed 3 years ago by westram

  • Description modified (diff)

Parts of this ticket are obsolete by wrong design:

  • leafs generally shall not have remarks, because they cannot be (and are not) saved into newick format
  • adapted ticket description

comment:13 Changed 3 years ago by westram

  • Resolution set to implemented
  • Status changed from _started to closed

by [17478]

comment:14 Changed 10 months ago by westram

related: [18637] hides bootstrap values at multifurcations (i.e. at zero-length branches)

comment:15 Changed 7 weeks ago by westram

  • Milestone changed from r18 to arb7.0
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