parsimony quick-add w/o GUI

[westram]

[intended for silva pipeline]

Input:

• arb.db containing
  • T
  • species that should be quick-added to T

Usage:

arb_pars_cli [options] input-db.arb "tree_target" "ali_used" [output-db.arb]
options::=--quick-add-marked |
          --quick-add-missing

--quick-add-missing should

• unmark all species
• mark species missing in
• continue like --quick-add-marked

--quick-add-marked should act like

• Tree/Add species to existing tree/ARB Parsimony (Quick add marked)
  

• save the (as output-db.arb if specified, as input-db.arb otherwise)

[westram]

Milestone renamed

[westram]

no longer requested