Opened 17 years ago

Closed 17 years ago

#66 closed defect (fixed)

Merge tool crashes

Reported by: westram Owned by: westram
Priority: blocker Milestone:
Component: no idea Version:
Keywords: Cc:

Description

ARB: Loading '/nfs/menuett1/westram/data/130301.arb' + Changes-File /nfs/menuett1/westram/data/130301.a70
ARB: no FastLoad File '/nfs/menuett1/westram/data/130301.ARM' found: loading entire database
ARB: Loading '/nfs/menuett1/westram/data/130301.arb' done

ARB: Loading '/nfs/menuett1/westram/data/14sep06_alishift.arb'
ARB: no FastLoad File '/nfs/menuett1/westram/data/14sep06_alishift.ARM' found: loading entire database
ARB: Loading '/nfs/menuett1/westram/data/14sep06_alishift.arb' done

aw_message: 'First you have to rename species in both databases'
Starting server (cmd='($ARBHOME/bin/arb_name_server -d/waltz0/westram/ARB.waltz/ARB.current.gcc.3.3.3/lib/nas/names.dat -T:3020) &')
Action: '($ARBHOME/bin/arb_name_server -d/waltz0/westram/ARB.waltz/ARB.current.gcc.3.3.3/lib/nas/names.dat -T:3020) &'
Detaching after fork from child process 4503.
Starting ARB_name_server..
* Loading /waltz0/westram/ARB.waltz/ARB.current.gcc.3.3.3/lib/nas/names.dat
* Parsing data
* Loaded NAMEDB v4 (contains 10219 names)
ARB_name_server is up.
Optimizing filled hash: size=103 elements=104 mean_access=1.51 hash-speed=66.2%
Optimized hash        : size=331 elements=104 mean_access=1.14 hash-speed=87.4%

Program received signal SIGSEGV, Segmentation fault.
GEN_is_genome_db (gb_main=0x82946e8, default_value=-1) at adGene.c:34
Current language:  auto; currently c
(gdb) 

Change History (2)

comment:1 Changed 17 years ago by westram

  • Owner changed from devel to westram
  • Status changed from new to assigned

comment:2 Changed 17 years ago by westram

  • Resolution set to fixed
  • Status changed from assigned to closed

Reason:

  • DB-type (genome/non-genome) expected by rename module
  • old DBs do not contain this flag

Solution:

  • set default to "non-genome" at startup of merge-module
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