Opened 9 years ago

Closed 9 years ago

#690 closed defect (fixed)

ARB crashes at import tree in Tree Admin

Reported by: guest Owned by: devel
Priority: normal Milestone:
Component: no idea Version:
Keywords: tree, import, crash Cc: kbseah@…

Description

Version: arb-devel-6.1.rev14693 installed in MPI Bremen.

Crash occurs when I click on "import" button in the Tree Admin window.

++ dig +short -t A sunray.mpi-bremen.de
+ SUNRAYS='172.16.8.9
172.16.8.10
172.16.8.7
172.16.8.8'
++ dig +short -t A arb-server-1.mpi-bremen.de
+ IP=172.16.8.13
+ ARB=/bioinf/software/arb/ubuntu-10.04/latest/bin/arb
++ echo 172.16.8.9 172.16.8.10 172.16.8.7 172.16.8.8
++ grep 172.16.8.13
+ [[ -n '' ]]
+ echo 'ARB is started locally on arb-server-1'
ARB is started locally on arb-server-1
+ /bioinf/software/arb/ubuntu-10.04/latest/bin/arb
Using ARBHOME='/bioinf/software/arb/ubuntu-10.04/latest'
Using properties from /home/kbseah/.arb_prop
Please wait while the program ARB is starting .....
Waiting for '/home/kbseah/.arb_tmp/sockets/arb_launcher.13344'..
Thu Feb 18 18:27:04 CET 2016 arb server.log created by arb_launcher
[arb_launcher[0]: Starting 'arb_ntree'..]
Using properties from '/bioinf/software/arb/etc/arb_default/ntree.arb'
Using properties from '/bioinf/software/arb/etc/arb_default/status.arb'
Error: 'Error loading properties 'status.arb': ARB ERROR: input file is not an arb database file'
Can't continue - terminating..

-------------------- ARB-backtrace 'GBK_terminate (reason above) ':
/bioinf/software/arb/ubuntu-10.04/latest/lib/libCORE.so(GBK_dump_backtrace(_IO_FILE*, char const*)+0x34)[0x7f2764d8f9c4]
/bioinf/software/arb/ubuntu-10.04/latest/lib/libCORE.so(GBK_terminate(char const*)+0x49)[0x7f2764d8fc19]
/bioinf/software/arb/ubuntu-10.04/latest/lib/libCORE.so(+0x12cd5)[0x7f2764d8fcd5]
/bioinf/software/arb/ubuntu-10.04/latest/lib/libWINDOW.so(AW_root::load_properties(char const*)+0x67)[0x7f27646125c7]
/bioinf/software/arb/ubuntu-10.04/latest/lib/libWINDOW.so(AW_root::AW_root(char const*, char const*, bool, UserActionTracker*, int*, char***)+0x9e)[0x7f27646126ae]
/bioinf/software/arb/ubuntu-10.04/latest/lib/libWINDOW.so(aw_initstatus()+0xe6)[0x7f2764616826]
arb_ntree(ARB_main(int, char**)+0x52)[0x458d52]
/lib/libc.so.6(__libc_start_main+0xfd)[0x7f276269ac4d]
arb_ntree[0x455e89]
-------------------- End of backtrace
[Terminating with signal 11]
Error: 'ID 'help' does not exist in xfig file'
Can't continue - terminating..

-------------------- ARB-backtrace 'GBK_terminate (reason above) ':
/bioinf/software/arb/ubuntu-10.04/latest/lib/libCORE.so(GBK_dump_backtrace(_IO_FILE*, char const*)+0x34)[0x7f2764d8f9c4]
/bioinf/software/arb/ubuntu-10.04/latest/lib/libCORE.so(GBK_terminate(char const*)+0x49)[0x7f2764d8fc19]
/bioinf/software/arb/ubuntu-10.04/latest/lib/libCORE.so(+0x12cd5)[0x7f2764d8fcd5]
/bioinf/software/arb/ubuntu-10.04/latest/lib/libWINDOW.so(AW_window::at(char const*)+0x2fe)[0x7f27645ef11e]
arb_ntree[0x485a8b]
/bioinf/software/arb/ubuntu-10.04/latest/lib/libWINDOW.so(+0x59d4b)[0x7f2764620d4b]
/bioinf/software/arb/ubuntu-10.04/latest/lib/libWINDOW.so(AW_window::popper(AW_window*, Callback_FVV<AW_window*, AW_root*>*)+0x9)[0x7f2764621209]
/bioinf/software/arb/ubuntu-10.04/latest/lib/libWINDOW.so(AW_cb::run_callbacks()+0xbf)[0x7f27645f6d7f]
/bioinf/software/arb/ubuntu-10.04/latest/lib/libWINDOW.so(AW_server_callback(_WidgetRec*, void*, void*)+0x8c)[0x7f276461a8ec]
/usr/lib/libXt.so.6(XtCallCallbackList+0x11f)[0x7f2763cadc7f]
/usr/lib/libXm.so.3(+0xe4b05)[0x7f27641f3b05]
/usr/lib/libXt.so.6(+0x4bb9d)[0x7f2763ce4b9d]
/usr/lib/libXt.so.6(_XtTranslateEvent+0x3fa)[0x7f2763ce546a]
/usr/lib/libXt.so.6(XtDispatchEventToWidget+0x3fb)[0x7f2763cbbf2b]
/usr/lib/libXt.so.6(+0x23783)[0x7f2763cbc783]
/usr/lib/libXt.so.6(XtDispatchEvent+0xb4)[0x7f2763cbb6e4]
/usr/lib/libXt.so.6(XtAppMainLoop+0x4b)[0x7f2763cbb88b]
arb_ntree[0x458548]
arb_ntree(ARB_main(int, char**)+0x47a)[0x45917a]
/lib/libc.so.6(__libc_start_main+0xfd)[0x7f276269ac4d]
arb_ntree[0x455e89]
-------------------- End of backtrace
[Terminating with signal 11]
ARB: Loading 'ntree.arb'
ARB: Loading '/bioinf/software/arb/etc/arb_default/ntree.arb' done

ARB: ARB: Loading '/home/kbseah/for_jill_2/nifH_2014April04_Lucinids_Nematodes.arb'
ARB: ARB: no FastLoad File '/home/kbseah/for_jill_2/nifH_2014April04_Lucinids_Nematodes.ARM' found => loading entire DB
ARB: ARB: Loading '/home/kbseah/for_jill_2/nifH_2014April04_Lucinids_Nematodes.arb' done

[arb_launcher[0]: 'arb_ntree' has terminated with error 139]
[arb_launcher[0]: All launched processes terminated]
[arb_launcher[0]: cleaning up arb session]
  PID TTY      STAT   TIME COMMAND
rmdir: failed to remove `/home/kbseah/.arb_prop/logs/20160218_182704.13354': Directory not empty

Session log has been stored in /home/kbseah/.arb_prop/logs/session.20160218_182704.13354.tgz
    and is also accessible via /home/kbseah/ARB_last_session.tgz

ARB crashed :-(
To report this goto http://bugs.arb-home.de/wiki/BugReport
Please include the session log(s) mentioned above!

[press ENTER]


Change History (1)

comment:1 Changed 9 years ago by westram

  • Resolution set to fixed
  • Status changed from new to closed

same as #693

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