Opened 9 years ago
Closed 9 years ago
#690 closed defect (fixed)
ARB crashes at import tree in Tree Admin
Reported by: | guest | Owned by: | devel |
---|---|---|---|
Priority: | normal | Milestone: | |
Component: | no idea | Version: | |
Keywords: | tree, import, crash | Cc: | kbseah@… |
Description
Version: arb-devel-6.1.rev14693 installed in MPI Bremen.
Crash occurs when I click on "import" button in the Tree Admin window.
++ dig +short -t A sunray.mpi-bremen.de + SUNRAYS='172.16.8.9 172.16.8.10 172.16.8.7 172.16.8.8' ++ dig +short -t A arb-server-1.mpi-bremen.de + IP=172.16.8.13 + ARB=/bioinf/software/arb/ubuntu-10.04/latest/bin/arb ++ echo 172.16.8.9 172.16.8.10 172.16.8.7 172.16.8.8 ++ grep 172.16.8.13 + [[ -n '' ]] + echo 'ARB is started locally on arb-server-1' ARB is started locally on arb-server-1 + /bioinf/software/arb/ubuntu-10.04/latest/bin/arb Using ARBHOME='/bioinf/software/arb/ubuntu-10.04/latest' Using properties from /home/kbseah/.arb_prop Please wait while the program ARB is starting ..... Waiting for '/home/kbseah/.arb_tmp/sockets/arb_launcher.13344'.. Thu Feb 18 18:27:04 CET 2016 arb server.log created by arb_launcher [arb_launcher[0]: Starting 'arb_ntree'..] Using properties from '/bioinf/software/arb/etc/arb_default/ntree.arb' Using properties from '/bioinf/software/arb/etc/arb_default/status.arb' Error: 'Error loading properties 'status.arb': ARB ERROR: input file is not an arb database file' Can't continue - terminating.. -------------------- ARB-backtrace 'GBK_terminate (reason above) ': /bioinf/software/arb/ubuntu-10.04/latest/lib/libCORE.so(GBK_dump_backtrace(_IO_FILE*, char const*)+0x34)[0x7f2764d8f9c4] /bioinf/software/arb/ubuntu-10.04/latest/lib/libCORE.so(GBK_terminate(char const*)+0x49)[0x7f2764d8fc19] /bioinf/software/arb/ubuntu-10.04/latest/lib/libCORE.so(+0x12cd5)[0x7f2764d8fcd5] /bioinf/software/arb/ubuntu-10.04/latest/lib/libWINDOW.so(AW_root::load_properties(char const*)+0x67)[0x7f27646125c7] /bioinf/software/arb/ubuntu-10.04/latest/lib/libWINDOW.so(AW_root::AW_root(char const*, char const*, bool, UserActionTracker*, int*, char***)+0x9e)[0x7f27646126ae] /bioinf/software/arb/ubuntu-10.04/latest/lib/libWINDOW.so(aw_initstatus()+0xe6)[0x7f2764616826] arb_ntree(ARB_main(int, char**)+0x52)[0x458d52] /lib/libc.so.6(__libc_start_main+0xfd)[0x7f276269ac4d] arb_ntree[0x455e89] -------------------- End of backtrace [Terminating with signal 11] Error: 'ID 'help' does not exist in xfig file' Can't continue - terminating.. -------------------- ARB-backtrace 'GBK_terminate (reason above) ': /bioinf/software/arb/ubuntu-10.04/latest/lib/libCORE.so(GBK_dump_backtrace(_IO_FILE*, char const*)+0x34)[0x7f2764d8f9c4] /bioinf/software/arb/ubuntu-10.04/latest/lib/libCORE.so(GBK_terminate(char const*)+0x49)[0x7f2764d8fc19] /bioinf/software/arb/ubuntu-10.04/latest/lib/libCORE.so(+0x12cd5)[0x7f2764d8fcd5] /bioinf/software/arb/ubuntu-10.04/latest/lib/libWINDOW.so(AW_window::at(char const*)+0x2fe)[0x7f27645ef11e] arb_ntree[0x485a8b] /bioinf/software/arb/ubuntu-10.04/latest/lib/libWINDOW.so(+0x59d4b)[0x7f2764620d4b] /bioinf/software/arb/ubuntu-10.04/latest/lib/libWINDOW.so(AW_window::popper(AW_window*, Callback_FVV<AW_window*, AW_root*>*)+0x9)[0x7f2764621209] /bioinf/software/arb/ubuntu-10.04/latest/lib/libWINDOW.so(AW_cb::run_callbacks()+0xbf)[0x7f27645f6d7f] /bioinf/software/arb/ubuntu-10.04/latest/lib/libWINDOW.so(AW_server_callback(_WidgetRec*, void*, void*)+0x8c)[0x7f276461a8ec] /usr/lib/libXt.so.6(XtCallCallbackList+0x11f)[0x7f2763cadc7f] /usr/lib/libXm.so.3(+0xe4b05)[0x7f27641f3b05] /usr/lib/libXt.so.6(+0x4bb9d)[0x7f2763ce4b9d] /usr/lib/libXt.so.6(_XtTranslateEvent+0x3fa)[0x7f2763ce546a] /usr/lib/libXt.so.6(XtDispatchEventToWidget+0x3fb)[0x7f2763cbbf2b] /usr/lib/libXt.so.6(+0x23783)[0x7f2763cbc783] /usr/lib/libXt.so.6(XtDispatchEvent+0xb4)[0x7f2763cbb6e4] /usr/lib/libXt.so.6(XtAppMainLoop+0x4b)[0x7f2763cbb88b] arb_ntree[0x458548] arb_ntree(ARB_main(int, char**)+0x47a)[0x45917a] /lib/libc.so.6(__libc_start_main+0xfd)[0x7f276269ac4d] arb_ntree[0x455e89] -------------------- End of backtrace [Terminating with signal 11] ARB: Loading 'ntree.arb' ARB: Loading '/bioinf/software/arb/etc/arb_default/ntree.arb' done ARB: ARB: Loading '/home/kbseah/for_jill_2/nifH_2014April04_Lucinids_Nematodes.arb' ARB: ARB: no FastLoad File '/home/kbseah/for_jill_2/nifH_2014April04_Lucinids_Nematodes.ARM' found => loading entire DB ARB: ARB: Loading '/home/kbseah/for_jill_2/nifH_2014April04_Lucinids_Nematodes.arb' done [arb_launcher[0]: 'arb_ntree' has terminated with error 139] [arb_launcher[0]: All launched processes terminated] [arb_launcher[0]: cleaning up arb session] PID TTY STAT TIME COMMAND rmdir: failed to remove `/home/kbseah/.arb_prop/logs/20160218_182704.13354': Directory not empty Session log has been stored in /home/kbseah/.arb_prop/logs/session.20160218_182704.13354.tgz and is also accessible via /home/kbseah/ARB_last_session.tgz ARB crashed :-( To report this goto http://bugs.arb-home.de/wiki/BugReport Please include the session log(s) mentioned above! [press ENTER]
Change History (1)
comment:1 Changed 9 years ago by westram
- Resolution set to fixed
- Status changed from new to closed
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same as #693