Opened 17 years ago

Last modified 11 years ago

#76 new task

Old Aligner dos not work

Reported by: guest Owned by: devel
Priority: minor Milestone:
Component: ARB_EDIT4 Version: SVN
Keywords: Cc:

Description

Der Alter Aligner tuts nicht mehr - weg damit:

Starting alignment of sequence: NvskSol2 sh: line 1: 17656 Segmentation fault arb_naligner -PARB_PT_SERVER0 "-s$i" -mf -minf3 -maxf30 -minw0.700000 -maxew0.200000 -ib5 -ic5 -cl0.250000 -cm0.500000 -ch0.800000 -mgf0.200000 -mma1 -msub0.000000,3.000000,1.000000,3.000000,5.000000,3.000000,0.000000,3.000000,1.000000,5.000000,1.000000,3.000000,0.000000,3.000000,5.000000,3.000000,1.000000,3.000000,0.000000,5.000000,5.000000,5.000000,5.000000,5.000000,0.000000 Aligner failed press (return) to close window

Change History (3)

comment:1 Changed 15 years ago by meierh

  • Owner changed from devel to meierh
  • Status changed from new to assigned

Function is not active in the Non-Expert-Mode!

The question is for "Expert-Mode": Remove from menu or reactivate? I mean it was a good but very slow aligner!

comment:2 Changed 15 years ago by westram

  • Owner changed from meierh to devel
  • Status changed from assigned to new

comment:3 Changed 11 years ago by westram

  • Priority changed from normal to minor
  • Type changed from defect to task
  • Version set to SVN
  • old editor has been removed in [6333]
  • NTREE menu entry removed in [11173]
  • old aligner still present in EDIT4 (Edit/old aligner)
    • still crashing - now with: 
      ALIGNER   V2.0  (Boris Reichel 5/95)

 Connecting to Database server
Error: 'Not inside GB_shell'
Can't continue - terminating..
    • disabled with [11174]

Further action:

  • attempt to fix (at least GB_shell problem which is easy)
    • if fixable, also add unittests for naligner
  • otherwise remove (interface from EDIT4, NALIGNER, …)
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