Opened 7 years ago
#765 new enhancement
calculate average pairwise distance from distance matrix
Reported by: | westram | Owned by: | devel |
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Priority: | normal | Milestone: | |
Component: | ARB_DIST | Version: | SVN |
Keywords: | Cc: |
Description
Provide a way to calculate average distance of species in matrix.
Motivation is to be able to compare
- -based average ingroup distance (AID; introduced with #653) with
- sequence-based distances as provided by distance matrix
Distance-sets to support:
- all species included in matrix (all possible pairs)
- only marked species (all possible pairs)
- all pairs of
- selected species and not-selected species (in matrix)
- marked species and not-marked species (in matrix)
Calculate (for each distance-set):
- arithmetic mean
- median
("selecting" one of the results could be used to set the limits in matrix view → allows to determine values above from values below the selected average)
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