Opened 7 years ago
Closed 6 years ago
#769 closed defect (cantfix)
Problems with RAxML in ARB
| Reported by: | guest | Owned by: | devel |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | no idea | Version: | |
| Keywords: | Cc: |
Description
When ever I try to use RAxML in ARB I have the above error message, can anyone help me? Thank you kind regards
06:36.28 can't load 'RAxML_log.viaARB' (Reason: No such file or directory)
(at /usr/arb/bin/raxml2arb.pl line 51.) Please check console for additional error reasons
Change History (5)
comment:1 in reply to: ↑ description Changed 7 years ago by westram
comment:2 Changed 7 years ago by westram
- Resolution set to invalid
- Status changed from new to closed
not enough information provided
comment:3 Changed 6 years ago by guest
I have the same problem.
Can't load 'RAxML_log.viaARB' (Rason: No such file or directory) ( at /usr/lib/arb/bi/raxml2arb.pl line 51)
raxmlHPC-PTHREADS-AX: axml.c6919: get_args: Assrtion 'result != (cha*)((void *)0)' failed Aborted (core dumped)
raxml2arb.pl viaARB 1 normal 1 import'PRG=RAxML Filter=ssuref:bacteria/termin RATE=DIST=GTRGAMMA-25 ALGO=new rapid chill climbing
Message: can't load RAxML_log.viaARB
What it can mean ? My system is Ubuntu 14.04 and arb 6.0.6
comment:4 Changed 6 years ago by guest
- Resolution invalid deleted
- Status changed from closed to reopened
comment:5 Changed 6 years ago by westram
- Resolution set to cantfix
- Status changed from reopened to closed
One reason causing this problem are multiple interfering arb-installations.
That is especially likely if arb had been installed via package manager (as available under ubuntu/debian) and also has been installed manually (tarball from http://download.arb-home.de/)
To avoid problems please uninstall the arb version installed via package manager
and/or
call the 'arb'-script with fully specified path, e.g.
pathToMyARB/bin/arb
For installation of tarballs see http://download.arb-home.de/release/arb-6.0.6/arb_README.txt (sections 2a and 2b).
Replying to guest:
Please try to read output given by RAxML.
You should find some error there.
Which arb version do you use?