Opened 5 years ago
Closed 2 years ago
#824 closed defect (fixed)
arb crashes during display of tree
| Reported by: | westram | Owned by: | westram |
|---|---|---|---|
| Priority: | critical | Milestone: | |
| Component: | Library (tree) | Version: | SVN |
| Keywords: | Cc: |
Description (last modified by westram)
- happens with
- ref.ssu.138.ecoli.tree (not uploaded, 55Mb)
- crash_arb.tree
- crash locations:
- tested with big
: NDEBUG + DEBUG version apparently crash at the same location
- tested with crash_arb.:
- dendrogram display still crashes at same location.
- IRS display crashes here at function entry point.
- radial display crashes here.
- tested with big
Observations:
- used device seems to be corrupted when crash occurs (might be some buffer overflow?)
- sanitizer does not report anything
- always happens inside size detection (device is size-devive; called via AWT_canvas::instant_resize)
Attachments (2)
- fasttree_28957.tree.tar.xz (142.9 KB) - added by westram 2 years ago.
- crash_arb.tree.tar.xz (64.5 KB) - added by westram 2 years ago.
-
compress
Download all attachments as: .zip
Change History (10)
comment:1 Changed 5 years ago by westram
- Description modified (diff)
- Owner changed from devel to westram
- Status changed from new to _started
comment:2 Changed 5 years ago by westram
- Status changed from _started to assigned
comment:3 Changed 4 years ago by westram
- Description modified (diff)
comment:4 Changed 4 years ago by westram
comment:5 Changed 4 years ago by westram
- Resolution set to fixed
- Status changed from assigned to closed
by [18641].
comment:6 Changed 2 years ago by westram
- Resolution fixed deleted
- Status changed from closed to reopened
Again happened with a calculated by fasttree:
- a "strong" filter had been used ⇒ many species had identical filtered sequences
- fasttree apparently inserts identical sequences into a list-style branch:
- most degenerated branch has more than 45900 furcations
(find attached below)
Changed 2 years ago by westram
comment:7 Changed 2 years ago by westram
- Description modified (diff)
comment:8 Changed 2 years ago by westram
- Resolution set to fixed
- Status changed from reopened to closed
by [19271]
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increasing stack-size to 40Mb fixes the problem.