Opened 2 years ago

Closed 2 years ago

Last modified 2 years ago

#848 closed issue (solved)

ARB 7 reproduces problem #751 and solution is no longer valid

Reported by: guest Owned by: westram
Priority: normal Milestone:
Component: other Version: arb-7.0
Keywords: Cc:

Description

My ARB 7 worked fine until recently. When calling ARB it reproduces bug#751. I tried: apt-get -y install gnuplot gv libmotif-common libxerces-c3.1 transfig xterm But library libxerces-c3.1 is no longer available.

(base) rmunoz@svr-app-51:~$ arb
Using ARBHOME='/data2/arb'
Using properties from /home/rmunoz/.arb_prop
Please wait while the program ARB is starting .....
Waiting for '/home/rmunoz/.arb_tmp/sockets/arb_launcher.634271'..
Thu Sep  8 08:48:11 AM CEST 2022 arb server.log created by arb_launcher
[arb_launcher[0]: log for ARB_PID='634271']
[arb_launcher[0]: Starting 'arb_ntree'..]
arb_ntree: error while loading shared libraries: libXm.so.4: cannot open shared object file: No such file or directory
[arb_launcher[0]: 'arb_ntree' has terminated with error 127]
[arb_launcher[0]: Still have 1 arb processes..]
[arb_launcher[0]: All launched processes terminated]
[arb_launcher[0]: cleaning up arb session]
No matching processes detected.
rmdir: failed to remove '/home/rmunoz/.arb_prop/logs/20220908_084811.634280': Directory not empty

Session log has been stored in /home/rmunoz/.arb_prop/logs/session.20220908_084811.634280.tgz
    and is also accessible via /home/rmunoz/ARB_last_session.tgz

ARB crashed :-(
To report this goto http://bugs.arb-home.de/wiki/BugReport
Please include the session log(s) mentioned above!

[press ENTER]

(base) rmunoz@svr-app-51:~$ apt-get -y install gnuplot gv libmotif-common libxerces-c3.1 transfig xterm
E: Could not open lock file /var/lib/dpkg/lock-frontend - open (13: Permission denied)
E: Unable to acquire the dpkg frontend lock (/var/lib/dpkg/lock-frontend), are you root?
(base) rmunoz@svr-app-51:~$ sudo apt-get -y install gnuplot gv libmotif-common libxerces-c3.1 transfig xterm
[sudo] password for rmunoz:
Reading package lists... Done
Building dependency tree... Done
Reading state information... Done
Note, selecting 'fig2dev' instead of 'transfig'
E: Unable to locate package libxerces-c3.1
E: Couldn't find any package by glob 'libxerces-c3.1'
E: Couldn't find any package by regex 'libxerces-c3.1'
(base) rmunoz@svr-app-51:~$

Change History (5)

comment:1 follow-up: Changed 2 years ago by westram

  • Component changed from Libraries (multi) to other
  • Owner changed from devel to westram
  • Priority changed from major to normal
  • Status changed from new to accepted
  • Type changed from misbehavior to issue
  • Please send me the file
    /home/rmunoz/.arb_prop/logs/session.20220908_084811.634280.tgz
    
    to devel@… (devel {at} arb-home.de).
  • Which is your operating system and which arb-version (i.e. which arb*.tgz) did you install?

comment:2 in reply to: ↑ 1 Changed 2 years ago by westram

  • Please send me the file /home/rmunoz/.arb_prop/logs/session.20220908_084811.634280.tgz

Thank you for sending the session logs.

  • Which is your operating system and which arb-version (i.e. which arb*.tgz) did you install?

OS has been reported as Ubuntu 22.04.1 LTS.
arb version as arb-7.0.ubuntu2004-amd64.tgz

comment:3 Changed 2 years ago by westram

In the contained file sys.info in section [shared libraries] only libXm.so.4 is listed as missing. libxerces-c-3.2.so is satisfied.

Please retry to install needed tools as you did above, but skip the libxerces-c3.1 from the list of arguments, i.e. try

sudo apt-get install gnuplot gv libmotif-common transfig xterm

comment:4 Changed 2 years ago by westram

  • Resolution set to solved
  • Status changed from accepted to closed

Additionally you have to install the package libxm4 or if this should not be available some package which depends on the motif library, e.g. libmotif-dev using

sudo apt-get install libmotif-dev

comment:5 Changed 2 years ago by westram

updated prerequisites installed via script with [19284]

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