Opened 17 months ago

Closed 16 months ago

Last modified 16 months ago

#854 closed enhancement (implemented)

detect helix regions with bad alignment

Reported by: westram Owned by: westram
Priority: major Milestone:
Component: ARB_EDIT4 Version: SVN
Keywords: Cc:

Description (last modified by westram)

Motivation

  • allow to concentrate sequence alignment on helices with worst alignment

Interface

  • input:
    • list of helix numbers
    • list of bad helix symbols
  • output:
    • list of species sorted by decreasing number of bad helix symbols found for alignment of each species.
    • optionally write that number into species field.

Change History (6)

comment:1 Changed 17 months ago by westram

  • Owner changed from devel to westram
  • Status changed from new to _started

comment:2 Changed 17 months ago by westram

  • Description modified (diff)

comment:3 Changed 16 months ago by westram

  • Description modified (diff)
  • basically implemented with [19363].

comment:4 Changed 16 months ago by westram

  • Description modified (diff)

comment:5 Changed 16 months ago by westram

  • Resolution set to implemented
  • Status changed from _started to closed

by [19363] + [19376]

comment:6 Changed 16 months ago by westram

[19376] fails build w/o unittest. fixed by [19378].

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