Opened 11 months ago

Closed 10 months ago

#859 closed issue (solved)

issue with adding species to existing tree

Reported by: guest Owned by: westram
Priority: normal Milestone:
Component: ARB_PARSIMONY Version: arb-7.0
Keywords: add marked Cc: hyu@…

Description

Dear arb developers,

I am using arb v7.0.1 on Mac v14.2. I am trying to add new short sequence aligned by ACT tool from arb-silva.de online into the master SILVA Release 138.1 SSU tree. The sequence was first imported into arb with gap (fasta with gap) and imported correctly with gaps as confirmed by the sequence viewer in arb. The sequence is from Bacteria (also confirmed with arb-silva classifier online). However, when I use the Tree | Add Species to Existing Tree | ARB parsimony (quick add marked) function, the sequence gets added to Archaea. Not sure why this is the case? Is ARB parsimony option no longer working?

Thank you for your help in advance!

Attachments (1)

seq_with_gap.fasta​ (48.9 KB) - added by guest 11 months ago.

Download all attachments as: .zip

Change History (3)

Changed 11 months ago by guest

comment:1 in reply to: ↑ description Changed 11 months ago by guest

Solved: found out that this is because of incorrect filter selection.

comment:2 Changed 10 months ago by westram

  • Owner changed from devel to westram
  • Resolution set to solved
  • Status changed from new to closed
  • Type changed from defect to issue

Thx for updating the issue.

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