source: branches/profile

Name Size Rev Age Author Last Change
../
AISC 11176   5 years westram * fixes compilation with COVERAGE!=0 (was broken by [10956])
AISC_COM 12592   4 years epruesse remove more traces of common.a
AISC_MKPTPS 12783   4 years westram * publish TESTs for which nm 2.24 fails to export source location
ARB_GDE 12926   4 years westram * remove at_set_min_size() (unused) * remove last (external) …
ARBDB 13641   4 years westram * merge [13018] from 'trunk' into 'profile' (to fix unittests in …
AWT 12920   4 years westram * abstract AW_at-storage-classes - create via factory - ask …
AWTC 12223   5 years westram * fix: impossible to create a new submission form (name always fell …
AWTI 12427   5 years westram - doc where variable expansion happens (checked code and help) - more …
bin 12892   4 years westram * generally do not link scripts in - PERL_SCRIPTS/ARBTOOLS/IFTHELP …
BINDEP 10577   5 years westram - added a bunch of small arb tools into dependency decls
BINDINGS 10998   5 years westram * cflags were completely unused (untested)
BUGEX 7044   8 years westram * fixed include wrappers (merges [7006] [7007]) - use gcc-style …
CONSENSUS_TREE 12014   5 years westram * reintegrates 'fix' into 'trunk' - slightly changes consensus …
CONVERTALN 13641   4 years westram * merge [13018] from 'trunk' into 'profile' (to fix unittests in …
CORE 12885   4 years westram * get rid of TEST_open_socket failures under jenkins
DBSERVER 11167   5 years westram - leak stuffed
DIST 12877   4 years westram * reintegrates 'cluster' into 'trunk' - implements #259 * adds: …
doc 6141   9 years westram * spellchecked all (phew)
EDIT4 12848   4 years westram * reintegrates 'fix' into 'trunk' - removes calls to …
EISPACK 10996   5 years westram * use cflags before cxxflags
etc 6141   9 years westram * spellchecked all (phew)
GDE 12832   4 years westram * merge [12819] from 'fix' into 'trunk' (probcons update)
GDEHELP 12931   4 years westram * fix label ('#…' means gfx)
GENOM 12831   4 years westram * merge [12806:12810] from 'fix' into 'trunk' - eliminates …
GENOM_IMPORT 11844   5 years westram * merge [11840:11843] from 'customize' into 'trunk' * adds: - …
GFX 12766   4 years epruesse attempt at building an icon for ARB databases
GL 11805   5 years westram * export 'LINUX' and 'REDHAT' to submakefiles * use ifeq instead of …
HEADERLIBS 7895   7 years westram * added arb_rnacma (correlated mutation analysis) written by Breno …
HELP_SOURCE 12898   4 years westram * merge [12896] from 'pars' into 'trunk'
ISLAND_HOPPING 10997   5 years westram * use cflags before cxxflags (where locally modified)
lib 12877   4 years westram * reintegrates 'cluster' into 'trunk' - implements #259 * adds: …
MERGE 12848   4 years westram * reintegrates 'fix' into 'trunk' - removes calls to …
MULTI_PROBE 12884   4 years westram * implements #22 ("expand zombies") - DRYed NT- and …
NALIGNER 11060   5 years westram * reintegrates 'ptsfix' into 'trunk': * adds: - …
NAMES 12275   5 years westram - replace magics - fix two wrong exit codes
NAMES_COM 12593   4 years westram - update depends for [12591]
NTREE 12884   4 years westram * implements #22 ("expand zombies") - DRYed NT- and …
PARSIMONY 13642   4 years westram * add perfmeter (insert + optimize) * disable …
PERL2ARB 12890   4 years westram * fix #602 - added manual wrapper for GB_delete
PERL_SCRIPTS 12892   4 years westram * generally do not link scripts in - PERL_SCRIPTS/ARBTOOLS/IFTHELP …
PERLTOOLS 11844   5 years westram * merge [11840:11843] from 'customize' into 'trunk' * adds: - …
PHYLO 12757   4 years westram * unify selectionlist creator names * …
PRIMER_DESIGN 12848   4 years westram * reintegrates 'fix' into 'trunk' - removes calls to …
PROBE 12803   4 years westram * merge from 'alilink' into 'trunk' * adds: - …
PROBE_COM 12593   4 years westram - update depends for [12591]
PROBE_DESIGN 12884   4 years westram * implements #22 ("expand zombies") - DRYed NT- and …
PROBE_SET 11464   5 years westram - un-dummy-fied transaction (renames only)
ptpan 11060   5 years westram * reintegrates 'ptsfix' into 'trunk': * adds: - …
READSEQ 11805   5 years westram * export 'LINUX' and 'REDHAT' to submakefiles * use ifeq instead of …
RNA3D 12803   4 years westram * merge from 'alilink' into 'trunk' * adds: - …
RNACMA 12478   4 years westram * use gcc features: - use -Og instead of -O0 (gcc4.8++) - …
SECEDIT 12920   4 years westram * abstract AW_at-storage-classes - create via factory - ask …
SEQ_QUALITY 12757   4 years westram * unify selectionlist creator names * …
SERVERCNTRL 12398   5 years westram * GBS_read_arb_tcp() - handle exported errors at callers - …
SH 12794   4 years epruesse SECURITY: arb_launcher sockets and socketdir must have mode 0700 and 0600
SL 13642   4 years westram * add perfmeter (insert + optimize) * disable …
SOURCE_TOOLS 13641   4 years westram * merge [13018] from 'trunk' into 'profile' (to fix unittests in …
STAT 12815   4 years epruesse fix common typos reported by lintian - splitted → split (irregular …
TEMPLATES 12667   4 years westram * reintegrates 'alilink' into 'trunk' - fixes #419, #145, #563 * …
TOOLS 13641   4 years westram * merge [13018] from 'trunk' into 'profile' (to fix unittests in …
TREEGEN 10996   5 years westram * use cflags before cxxflags
UNIT_TESTER 13641   4 years westram * merge [13018] from 'trunk' into 'profile' (to fix unittests in …
util 12885   4 years westram * get rid of TEST_open_socket failures under jenkins
WETC 11034   5 years westram * depends for [11033]
WINDOW 12930   4 years westram * sync behavior with gtk - allow gfx-labels before input- and …
XML 12765   4 years epruesse - remove executable flag from xml.[ch]xx
XML_IMPORT 10996   5 years westram * use cflags before cxxflags
arb_CHANGES.txt 17.4 KB 12925   4 years westram - mention raxml8 + expand zombies
arb_install.sh 14.2 KB 11718   5 years westram * reverts [11717] * merge [11714] into trunk (accidentally went into …
arb_INSTALL.txt 4.6 KB 12330   5 years westram - doc installing precompiled versions on debian (tested with wheezy)
arb_LICENSE.txt 10.8 KB 10842   5 years westram * reintegrates 'help' into 'trunk': * adds: - …
arb_OS_X.txt 5.5 KB 12527   4 years westram use readonly svn url
arb_OS_X_MacPorts.txt 370 bytes 6288   9 years westram * include ALL arb_*.txt into release tarball * renamed …
arb_README.txt 7.4 KB 12566   4 years westram * merge some changes from 'stable' back into 'trunk' * adds: - …
arb_UBUNTU.txt 1.3 KB 10420   5 years epruesse - work around linking bug in centos5 - add libreadline-dev to ubuntu …
arbsrc_README.txt 210 bytes 6288   9 years westram * include ALL arb_*.txt into release tarball * renamed …
arbsrc_README_gcc.txt 2.1 KB 7331   8 years westram - tested and added gcc 4.5.2
config.makefile.template 1.7 KB 12692   4 years epruesse fix "DEBIAN := 1 #bla" set $(DEBIAN) to "1 " (ARGH!)
demo.arb 78.9 KB 7664   7 years westram * merge from dev [7509] [7510] [7511] [7514] [7517] [7520] [7524]
Doxyfile 62.3 KB 11492   5 years westram * fix several doxygen issues (doxygen 1.6.3) - force macro …
Makefile 66.3 KB 12754   4 years westram * reintegrates 'alilink' into 'trunk' - DRYed ali admin(s) * …
README 717 bytes 5390   11 years westram - TAB-Ex
  • Property svn:ignore set to
    *.last_gcc
    ARB_SOURCE_DOC
    ChangeLog
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    PERL5
    arb.tgz
    arbsrc.lst
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    compile.log
    config.makefile
    do_core
    TAGS
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    arbsrc.tgz
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    patches.arb
    makeloc.here
    interdiff.patch
    white.patch
    latest_iwhite.patch
    nbproject
    fulldiff.patch
    untested.patch
    *.last_compiler
    arb-dev.tgz
  • Property svn:mergeinfo set to (toggle deleted branches)
    /branches/alilink11490-11577,​12419-12666,​12669-12705,​12708-12753,​12801-12802
    /branches/fix11579-11625,​11890-11901,​11904-11910,​11985-11997,​12008-12013,​12023-12042,​12049-12053,​12058-12137,​12147-12156,​12445-12456,​12806-12833,​12839-12847
    /branches/stable12378-12722
    /trunk13018
    /branches/aci10844-11080
    /branches/addtest12468-12472
    /branches/bpcb10161-10208
    /branches/bpcbold10163-10164,​10180,​10182-10185,​10191-10192
    /branches/bugrep11744-11753
    /branches/cleanup11876-11885
    /branches/cluster12869-12876
    /branches/customize11828-11873,​11913-11947,​11950-11967
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    /branches/treeTests11198-11335
    /branches/xpmfix9770-9776
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