source: branches/profile

Name Size Rev Age Author Last Change
../
AISC ​ 11176   12 years westram * fixes compilation with COVERAGE!=0 (was broken by [10956])
AISC_COM ​ 12592   11 years epruesse remove more traces of common.a
AISC_MKPTPS ​ 12783   11 years westram * publish TESTs for which nm 2.24 fails to export source location
ARB_GDE ​ 12926   11 years westram * remove at_set_min_size() (unused) * remove last (external) …
ARBDB ​ 13641   11 years westram * merge [13018] from 'trunk' into 'profile' (to fix unittests in …
AWT ​ 12920   11 years westram * abstract AW_at-storage-classes - create via factory - ask …
AWTC ​ 12223   12 years westram * fix: impossible to create a new submission form (name always fell …
AWTI ​ 12427   11 years westram - doc where variable expansion happens (checked code and help) - more …
bin ​ 12892   11 years westram * generally do not link scripts in - PERL_SCRIPTS/ARBTOOLS/IFTHELP …
BINDEP ​ 10577   12 years westram - added a bunch of small arb tools into dependency decls
BINDINGS ​ 10998   12 years westram * cflags were completely unused (untested)
BUGEX ​ 7044   15 years westram * fixed include wrappers (merges [7006] [7007]) - use gcc-style …
CONSENSUS_TREE ​ 12014   12 years westram * reintegrates 'fix' into 'trunk' - slightly changes consensus …
CONVERTALN ​ 13641   11 years westram * merge [13018] from 'trunk' into 'profile' (to fix unittests in …
CORE ​ 12885   11 years westram * get rid of TEST_open_socket failures under jenkins
DBSERVER ​ 11167   12 years westram - leak stuffed
DIST ​ 12877   11 years westram * reintegrates 'cluster' into 'trunk' - implements #259 * adds: …
doc ​ 6141   16 years westram * spellchecked all (phew)
EDIT4 ​ 12848   11 years westram * reintegrates 'fix' into 'trunk' - removes calls to …
EISPACK ​ 10996   12 years westram * use cflags before cxxflags
etc ​ 6141   16 years westram * spellchecked all (phew)
GDE ​ 12832   11 years westram * merge [12819] from 'fix' into 'trunk' (probcons update)
GDEHELP ​ 12931   11 years westram * fix label ('#…' means gfx)
GENOM ​ 12831   11 years westram * merge [12806:12810] from 'fix' into 'trunk' - eliminates …
GENOM_IMPORT ​ 11844   12 years westram * merge [11840:11843] from 'customize' into 'trunk' * adds: - …
GFX ​ 12766   11 years epruesse attempt at building an icon for ARB databases
GL ​ 11805   12 years westram * export 'LINUX' and 'REDHAT' to submakefiles * use ifeq instead of …
HEADERLIBS ​ 7895   14 years westram * added arb_rnacma (correlated mutation analysis) written by Breno …
HELP_SOURCE ​ 12898   11 years westram * merge [12896] from 'pars' into 'trunk'
ISLAND_HOPPING ​ 10997   12 years westram * use cflags before cxxflags (where locally modified)
lib ​ 12877   11 years westram * reintegrates 'cluster' into 'trunk' - implements #259 * adds: …
MERGE ​ 12848   11 years westram * reintegrates 'fix' into 'trunk' - removes calls to …
MULTI_PROBE ​ 12884   11 years westram * implements #22 ("expand zombies") - DRYed NT- and …
NALIGNER ​ 11060   12 years westram * reintegrates 'ptsfix' into 'trunk': * adds: - …
NAMES ​ 12275   11 years westram - replace magics - fix two wrong exit codes
NAMES_COM ​ 12593   11 years westram - update depends for [12591]
NTREE ​ 12884   11 years westram * implements #22 ("expand zombies") - DRYed NT- and …
PARSIMONY ​ 13642   11 years westram * add perfmeter (insert + optimize) * disable …
PERL2ARB ​ 12890   11 years westram * fix #602 - added manual wrapper for GB_delete
PERL_SCRIPTS ​ 12892   11 years westram * generally do not link scripts in - PERL_SCRIPTS/ARBTOOLS/IFTHELP …
PERLTOOLS ​ 11844   12 years westram * merge [11840:11843] from 'customize' into 'trunk' * adds: - …
PHYLO ​ 12757   11 years westram * unify selectionlist creator names * …
PRIMER_DESIGN ​ 12848   11 years westram * reintegrates 'fix' into 'trunk' - removes calls to …
PROBE ​ 12803   11 years westram * merge from 'alilink' into 'trunk' * adds: - …
PROBE_COM ​ 12593   11 years westram - update depends for [12591]
PROBE_DESIGN ​ 12884   11 years westram * implements #22 ("expand zombies") - DRYed NT- and …
PROBE_SET ​ 11464   12 years westram - un-dummy-fied transaction (renames only)
ptpan ​ 11060   12 years westram * reintegrates 'ptsfix' into 'trunk': * adds: - …
READSEQ ​ 11805   12 years westram * export 'LINUX' and 'REDHAT' to submakefiles * use ifeq instead of …
RNA3D ​ 12803   11 years westram * merge from 'alilink' into 'trunk' * adds: - …
RNACMA ​ 12478   11 years westram * use gcc features: - use -Og instead of -O0 (gcc4.8++) - …
SECEDIT ​ 12920   11 years westram * abstract AW_at-storage-classes - create via factory - ask …
SEQ_QUALITY ​ 12757   11 years westram * unify selectionlist creator names * …
SERVERCNTRL ​ 12398   11 years westram * GBS_read_arb_tcp() - handle exported errors at callers - …
SH ​ 12794   11 years epruesse SECURITY: arb_launcher sockets and socketdir must have mode 0700 and 0600
SL ​ 13642   11 years westram * add perfmeter (insert + optimize) * disable …
SOURCE_TOOLS ​ 13641   11 years westram * merge [13018] from 'trunk' into 'profile' (to fix unittests in …
STAT ​ 12815   11 years epruesse fix common typos reported by lintian - splitted → split (irregular …
TEMPLATES ​ 12667   11 years westram * reintegrates 'alilink' into 'trunk' - fixes #419, #145, #563 * …
TOOLS ​ 13641   11 years westram * merge [13018] from 'trunk' into 'profile' (to fix unittests in …
TREEGEN ​ 10996   12 years westram * use cflags before cxxflags
UNIT_TESTER ​ 13641   11 years westram * merge [13018] from 'trunk' into 'profile' (to fix unittests in …
util ​ 12885   11 years westram * get rid of TEST_open_socket failures under jenkins
WETC ​ 11034   12 years westram * depends for [11033]
WINDOW ​ 12930   11 years westram * sync behavior with gtk - allow gfx-labels before input- and …
XML ​ 12765   11 years epruesse - remove executable flag from xml.[ch]xx
XML_IMPORT ​ 10996   12 years westram * use cflags before cxxflags
arb_CHANGES.txt 17.4 KB ​ 12925   11 years westram - mention raxml8 + expand zombies
arb_install.sh 14.2 KB ​ 11718   12 years westram * reverts [11717] * merge [11714] into trunk (accidentally went into …
arb_INSTALL.txt 4.6 KB ​ 12330   11 years westram - doc installing precompiled versions on debian (tested with wheezy)
arb_LICENSE.txt 10.8 KB ​ 10842   12 years westram * reintegrates 'help' into 'trunk': * adds: - …
arb_OS_X.txt 5.5 KB ​ 12527   11 years westram use readonly svn url
arb_OS_X_MacPorts.txt 370 bytes ​ 6288   16 years westram * include ALL arb_*.txt into release tarball * renamed …
arb_README.txt 7.4 KB ​ 12566   11 years westram * merge some changes from 'stable' back into 'trunk' * adds: - …
arb_UBUNTU.txt 1.3 KB ​ 10420   12 years epruesse - work around linking bug in centos5 - add libreadline-dev to ubuntu …
arbsrc_README.txt 210 bytes ​ 6288   16 years westram * include ALL arb_*.txt into release tarball * renamed …
arbsrc_README_gcc.txt 2.1 KB ​ 7331   15 years westram - tested and added gcc 4.5.2
config.makefile.template 1.7 KB ​ 12692   11 years epruesse fix "DEBIAN := 1 #bla" set $(DEBIAN) to "1 " (ARGH!)
demo.arb 78.9 KB ​ 7664   14 years westram * merge from dev [7509] [7510] [7511] [7514] [7517] [7520] [7524] …
Doxyfile 62.3 KB ​ 11492   12 years westram * fix several doxygen issues (doxygen 1.6.3) - force macro …
Makefile 66.3 KB ​ 12754   11 years westram * reintegrates 'alilink' into 'trunk' - DRYed ali admin(s) * …
README 717 bytes ​ 5390   17 years westram - TAB-Ex
  • Property svn:ignore set to
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    latest_iwhite.patch
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    arb-dev.tgz
  • Property svn:mergeinfo set to (toggle deleted branches)
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    /branches/help10647-10841
    /branches/stable12378-12722
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