source:
branches/profile
| Name | Size | Rev | Age | Author | Last Change |
|---|---|---|---|---|---|
| ../ | |||||
| AISC | | 11176 | 11 years | westram | * fixes compilation with COVERAGE!=0 (was broken by [10956]) |
| AISC_COM | | 12592 | 11 years | epruesse | remove more traces of common.a |
| AISC_MKPTPS | | 12783 | 11 years | westram | * publish TESTs for which nm 2.24 fails to export source location |
| ARB_GDE | | 12926 | 11 years | westram | * remove at_set_min_size() (unused) * remove last (external) … |
| ARBDB | | 13641 | 10 years | westram | * merge [13018] from 'trunk' into 'profile' (to fix unittests in … |
| AWT | | 12920 | 11 years | westram | * abstract AW_at-storage-classes - create via factory - ask … |
| AWTC | | 12223 | 11 years | westram | * fix: impossible to create a new submission form (name always fell … |
| AWTI | | 12427 | 11 years | westram | - doc where variable expansion happens (checked code and help) - more … |
| bin | | 12892 | 11 years | westram | * generally do not link scripts in - PERL_SCRIPTS/ARBTOOLS/IFTHELP … |
| BINDEP | | 10577 | 12 years | westram | - added a bunch of small arb tools into dependency decls |
| BINDINGS | | 10998 | 12 years | westram | * cflags were completely unused (untested) |
| BUGEX | | 7044 | 15 years | westram | * fixed include wrappers (merges [7006] [7007]) - use gcc-style … |
| CONSENSUS_TREE | | 12014 | 11 years | westram | * reintegrates 'fix' into 'trunk' - slightly changes consensus … |
| CONVERTALN | | 13641 | 10 years | westram | * merge [13018] from 'trunk' into 'profile' (to fix unittests in … |
| CORE | | 12885 | 11 years | westram | * get rid of TEST_open_socket failures under jenkins |
| DBSERVER | | 11167 | 11 years | westram | - leak stuffed |
| DIST | | 12877 | 11 years | westram | * reintegrates 'cluster' into 'trunk' - implements #259 * adds: … |
| doc | | 6141 | 16 years | westram | * spellchecked all (phew) |
| EDIT4 | | 12848 | 11 years | westram | * reintegrates 'fix' into 'trunk' - removes calls to … |
| EISPACK | | 10996 | 12 years | westram | * use cflags before cxxflags |
| etc | | 6141 | 16 years | westram | * spellchecked all (phew) |
| GDE | | 12832 | 11 years | westram | * merge [12819] from 'fix' into 'trunk' (probcons update) |
| GDEHELP | | 12931 | 11 years | westram | * fix label ('#…' means gfx) |
| GENOM | | 12831 | 11 years | westram | * merge [12806:12810] from 'fix' into 'trunk' - eliminates … |
| GENOM_IMPORT | | 11844 | 11 years | westram | * merge [11840:11843] from 'customize' into 'trunk' * adds: - … |
| GFX | | 12766 | 11 years | epruesse | attempt at building an icon for ARB databases |
| GL | | 11805 | 11 years | westram | * export 'LINUX' and 'REDHAT' to submakefiles * use ifeq instead of … |
| HEADERLIBS | | 7895 | 14 years | westram | * added arb_rnacma (correlated mutation analysis) written by Breno … |
| HELP_SOURCE | | 12898 | 11 years | westram | * merge [12896] from 'pars' into 'trunk' |
| ISLAND_HOPPING | | 10997 | 12 years | westram | * use cflags before cxxflags (where locally modified) |
| lib | | 12877 | 11 years | westram | * reintegrates 'cluster' into 'trunk' - implements #259 * adds: … |
| MERGE | | 12848 | 11 years | westram | * reintegrates 'fix' into 'trunk' - removes calls to … |
| MULTI_PROBE | | 12884 | 11 years | westram | * implements #22 ("expand zombies") - DRYed NT- and … |
| NALIGNER | | 11060 | 12 years | westram | * reintegrates 'ptsfix' into 'trunk': * adds: - … |
| NAMES | | 12275 | 11 years | westram | - replace magics - fix two wrong exit codes |
| NAMES_COM | | 12593 | 11 years | westram | - update depends for [12591] |
| NTREE | | 12884 | 11 years | westram | * implements #22 ("expand zombies") - DRYed NT- and … |
| PARSIMONY | | 13642 | 10 years | westram | * add perfmeter (insert + optimize) * disable … |
| PERL2ARB | | 12890 | 11 years | westram | * fix #602 - added manual wrapper for GB_delete |
| PERL_SCRIPTS | | 12892 | 11 years | westram | * generally do not link scripts in - PERL_SCRIPTS/ARBTOOLS/IFTHELP … |
| PERLTOOLS | | 11844 | 11 years | westram | * merge [11840:11843] from 'customize' into 'trunk' * adds: - … |
| PHYLO | | 12757 | 11 years | westram | * unify selectionlist creator names * … |
| PRIMER_DESIGN | | 12848 | 11 years | westram | * reintegrates 'fix' into 'trunk' - removes calls to … |
| PROBE | | 12803 | 11 years | westram | * merge from 'alilink' into 'trunk' * adds: - … |
| PROBE_COM | | 12593 | 11 years | westram | - update depends for [12591] |
| PROBE_DESIGN | | 12884 | 11 years | westram | * implements #22 ("expand zombies") - DRYed NT- and … |
| PROBE_SET | | 11464 | 11 years | westram | - un-dummy-fied transaction (renames only) |
| ptpan | | 11060 | 12 years | westram | * reintegrates 'ptsfix' into 'trunk': * adds: - … |
| READSEQ | | 11805 | 11 years | westram | * export 'LINUX' and 'REDHAT' to submakefiles * use ifeq instead of … |
| RNA3D | | 12803 | 11 years | westram | * merge from 'alilink' into 'trunk' * adds: - … |
| RNACMA | | 12478 | 11 years | westram | * use gcc features: - use -Og instead of -O0 (gcc4.8++) - … |
| SECEDIT | | 12920 | 11 years | westram | * abstract AW_at-storage-classes - create via factory - ask … |
| SEQ_QUALITY | | 12757 | 11 years | westram | * unify selectionlist creator names * … |
| SERVERCNTRL | | 12398 | 11 years | westram | * GBS_read_arb_tcp() - handle exported errors at callers - … |
| SH | | 12794 | 11 years | epruesse | SECURITY: arb_launcher sockets and socketdir must have mode 0700 and 0600 |
| SL | | 13642 | 10 years | westram | * add perfmeter (insert + optimize) * disable … |
| SOURCE_TOOLS | | 13641 | 10 years | westram | * merge [13018] from 'trunk' into 'profile' (to fix unittests in … |
| STAT | | 12815 | 11 years | epruesse | fix common typos reported by lintian - splitted → split (irregular … |
| TEMPLATES | | 12667 | 11 years | westram | * reintegrates 'alilink' into 'trunk' - fixes #419, #145, #563 * … |
| TOOLS | | 13641 | 10 years | westram | * merge [13018] from 'trunk' into 'profile' (to fix unittests in … |
| TREEGEN | | 10996 | 12 years | westram | * use cflags before cxxflags |
| UNIT_TESTER | | 13641 | 10 years | westram | * merge [13018] from 'trunk' into 'profile' (to fix unittests in … |
| util | | 12885 | 11 years | westram | * get rid of TEST_open_socket failures under jenkins |
| WETC | | 11034 | 12 years | westram | * depends for [11033] |
| WINDOW | | 12930 | 11 years | westram | * sync behavior with gtk - allow gfx-labels before input- and … |
| XML | | 12765 | 11 years | epruesse | - remove executable flag from xml.[ch]xx |
| XML_IMPORT | | 10996 | 12 years | westram | * use cflags before cxxflags |
| arb_CHANGES.txt | 17.4 KB | 12925 | 11 years | westram | - mention raxml8 + expand zombies |
| arb_install.sh | 14.2 KB | 11718 | 11 years | westram | * reverts [11717] * merge [11714] into trunk (accidentally went into … |
| arb_INSTALL.txt | 4.6 KB | 12330 | 11 years | westram | - doc installing precompiled versions on debian (tested with wheezy) |
| arb_LICENSE.txt | 10.8 KB | 10842 | 12 years | westram | * reintegrates 'help' into 'trunk': * adds: - … |
| arb_OS_X.txt | 5.5 KB | 12527 | 11 years | westram | use readonly svn url |
| arb_OS_X_MacPorts.txt | 370 bytes | 6288 | 15 years | westram | * include ALL arb_*.txt into release tarball * renamed … |
| arb_README.txt | 7.4 KB | 12566 | 11 years | westram | * merge some changes from 'stable' back into 'trunk' * adds: - … |
| arb_UBUNTU.txt | 1.3 KB | 10420 | 12 years | epruesse |
- work around linking  in centos5
- add libreadline-dev to ubuntu …
|
| arbsrc_README.txt | 210 bytes | 6288 | 15 years | westram | * include ALL arb_*.txt into release tarball * renamed … |
| arbsrc_README_gcc.txt | 2.1 KB | 7331 | 14 years | westram | - tested and added gcc 4.5.2 |
| config.makefile.template | 1.7 KB | 12692 | 11 years | epruesse | fix "DEBIAN := 1 #bla" set $(DEBIAN) to "1 " (ARGH!) |
| demo.arb | 78.9 KB | 7664 | 14 years | westram | * merge from dev [7509] [7510] [7511] [7514] [7517] [7520] [7524] … |
| Doxyfile | 62.3 KB | 11492 | 11 years | westram | * fix several doxygen issues (doxygen 1.6.3) - force macro … |
| Makefile | 66.3 KB | 12754 | 11 years | westram | * reintegrates 'alilink' into 'trunk' - DRYed ali admin(s) * … |
| README | 717 bytes | 5390 | 17 years | westram | - TAB-Ex |
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