../
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awt
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12848
|
10 years
|
westram |
* reintegrates 'fix' into 'trunk'
- removes calls to …
|
awtc
|
|
12396
|
10 years
|
westram |
* do not export error from
- arb_look_and_start_server()
- …
|
consensus
|
|
9789
|
12 years
|
westram |
* removed unused '.fig's
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cpro
|
|
11629
|
11 years
|
epruesse |
remove "SAI→Other→Positional Variability" feature (decided in #359)
…
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edit4
|
|
8696
|
13 years
|
westram |
* merge from saiali log:branches/saiali@8635-8695
- unalign center …
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etc
|
|
6190
|
15 years
|
westram |
* removed unused resources
|
faligner
|
|
8696
|
13 years
|
westram |
* merge from saiali log:branches/saiali@8635-8695
- unalign center …
|
merge
|
|
12754
|
10 years
|
westram |
* reintegrates 'alilink' into 'trunk'
- DRYed ali admin(s)
* …
|
pars
|
|
6141
|
15 years
|
westram |
* spellchecked all (phew)
|
phylo
|
|
11229
|
11 years
|
westram |
* ARB_PHYLO alignment selection
- made window resizable
- …
|
query
|
|
12791
|
10 years
|
westram |
* MODIFY DATABASE FIELD of listed …
- replace safety questions …
|
unused
|
|
6141
|
15 years
|
westram |
* spellchecked all (phew)
|
window
|
|
8607
|
13 years
|
westram |
merge from e4fix [8135] [8136] [8137] [8138] [8139] [8140] [8141] …
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ad_al_si.fig
|
462 bytes
|
3298
|
20 years
|
westram |
* empty log message *
|
ad_align.fig
|
1.7 KB
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12754
|
10 years
|
westram |
* reintegrates 'alilink' into 'trunk'
- DRYed ali admin(s)
* …
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ad_branch.fig
|
1.6 KB
|
8863
|
12 years
|
westram |
* new module for branch analysis
- moved code to mark long, deep …
|
ad_cons_tree.fig
|
1.0 KB
|
8587
|
13 years
|
westram |
* create consensus from gui
|
ad_conv.fig
|
623 bytes
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5939
|
16 years
|
westram |
* moved non-GUI parts from AWT/AWT_changekey.cxx to …
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ad_delof.fig
|
838 bytes
|
1719
|
21 years
|
westram |
updated (to ensure correct window sizes)
|
ad_ext.fig
|
1.4 KB
|
12848
|
10 years
|
westram |
* reintegrates 'fix' into 'trunk'
- removes calls to …
|
ad_ext_group.fig
|
836 bytes
|
12848
|
10 years
|
westram |
* reintegrates 'fix' into 'trunk'
- removes calls to …
|
ad_fcrea.fig
|
275 bytes
|
2
|
24 years
|
oldcode |
Initial revision
|
ad_gen_create.fig
|
2.2 KB
|
8607
|
13 years
|
westram |
merge from e4fix [8135] [8136] [8137] [8138] [8139] [8140] [8141] …
|
ad_kreo.fig
|
1.1 KB
|
7770
|
13 years
|
westram |
merge from dev [7679] [7683] [7684] [7685] [7686]
* ARBDB → CORE
…
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ad_one_tree.fig
|
604 bytes
|
11423
|
11 years
|
westram |
* reintegrates '' into 'trunk':
- topology ordering (beautify …
|
ad_query.fig
|
2.6 KB
|
5865
|
16 years
|
westram |
* replaced REFRESH button but sort-toggle
- default sort order and …
|
ad_selManNam.fig
|
971 bytes
|
1288
|
22 years
|
richter |
belogs to manual selection of valid name
|
ad_spec.fig
|
1.0 KB
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10444
|
11 years
|
epruesse |
rename buttons in species information window
- DETACH → "New …
|
ad_spec_nn.fig
|
2.2 KB
|
8535
|
13 years
|
westram |
* scaling of relative scores in 'Next neighbour search' can be …
|
ad_spec_nnm.fig
|
2.1 KB
|
8535
|
13 years
|
westram |
* scaling of relative scores in 'Next neighbour search' can be …
|
ad_table_admin.fig
|
1.4 KB
|
2
|
24 years
|
oldcode |
Initial revision
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ad_table_fields.fig
|
1.5 KB
|
2
|
24 years
|
oldcode |
Initial revision
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ad_tree.fig
|
1.8 KB
|
8582
|
13 years
|
westram |
* added generic subset-selection (refactored from yadhus code in …
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ad_two_trees.fig
|
947 bytes
|
11423
|
11 years
|
westram |
* reintegrates '' into 'trunk':
- topology ordering (beautify …
|
arb_intro.fig
|
2.6 KB
|
6141
|
15 years
|
westram |
* spellchecked all (phew)
|
calltexe.fig
|
595 bytes
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2
|
24 years
|
oldcode |
Initial revision
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chimera_check.fig
|
1.7 KB
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12101
|
11 years
|
westram |
* chimera check
- renamed code, help, fig, macro id (to …
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concatenate.fig
|
1.2 KB
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8582
|
13 years
|
westram |
* added generic subset-selection (refactored from yadhus code in …
|
conservProfile2Gnuplot.fig
|
2.2 KB
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6141
|
15 years
|
westram |
* spellchecked all (phew)
|
dbbrowser.fig
|
1.1 KB
|
8039
|
13 years
|
westram |
merge from dev [7966] [7968]
* tweaked ARB browser
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di_cancel.fig
|
984 bytes
|
2
|
24 years
|
oldcode |
Initial revision
|
di_clusters.fig
|
2.1 KB
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12877
|
10 years
|
westram |
* reintegrates 'cluster' into 'trunk'
- implements #259
* adds:
…
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di_ge_ma.fig
|
3.9 KB
|
11278
|
11 years
|
westram |
* added two automation toggles to ARB_DIST
- 'Auto recalculate' …
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displayField.fig
|
3.2 KB
|
3176
|
20 years
|
yadhu |
Xfig file to change Species Information displayed in SAI Probe …
|
ed_al_ex.fig
|
1.0 KB
|
2
|
24 years
|
oldcode |
Initial revision
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ed_al_sp.fig
|
3.2 KB
|
2
|
24 years
|
oldcode |
Initial revision
|
ed_key.fig
|
509 bytes
|
2
|
24 years
|
oldcode |
Initial revision
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fileselect.fig
|
970 bytes
|
6223
|
15 years
|
westram |
* implemented file selection box (this is the first modal window using …
|
gde3item.fig
|
1.8 KB
|
6141
|
15 years
|
westram |
* spellchecked all (phew)
|
gdeitem.fig
|
1.4 KB
|
8767
|
13 years
|
westram |
* layout fix
|
gdeitem_simple.fig
|
470 bytes
|
5046
|
17 years
|
westram |
- fig for GDE windows w/o sequence export
|
gene_layout.fig
|
2.4 KB
|
200
|
24 years
|
westram |
* empty log message *
|
gene_options.fig
|
463 bytes
|
172
|
24 years
|
westram |
several changes (gene display, crash-fix for merge+export, …)
|
help.fig
|
1.4 KB
|
1069
|
22 years
|
westram |
added browse button
|
insdel.fig
|
741 bytes
|
9633
|
12 years
|
westram |
* reintegrated branch 'sai'
- providing basic insert/delete by SAI
|
insdel_sai.fig
|
1.6 KB
|
9633
|
12 years
|
westram |
* reintegrated branch 'sai'
- providing basic insert/delete by SAI
|
join_species.fig
|
1.1 KB
|
6141
|
15 years
|
westram |
* spellchecked all (phew)
|
load_box.fig
|
858 bytes
|
9797
|
12 years
|
westram |
* reintegrated branch 'merge'
- implements #194
|
macro_select.fig
|
1.2 KB
|
11778
|
11 years
|
westram |
* reintegrates 'macros' into 'trunk'
- implements #456
* adds:
…
|
merge_species.fig
|
839 bytes
|
1009
|
22 years
|
yadhu |
changes to concatenaton tool.
|
message.fig
|
489 bytes
|
1719
|
21 years
|
westram |
updated (to ensure correct window sizes)
|
mp_results.fig
|
1.7 KB
|
8771
|
13 years
|
westram |
* multi probe
- use generic sellist collect buttons
* …
|
multiprobe.fig
|
2.7 KB
|
8771
|
13 years
|
westram |
* multi probe
- use generic sellist collect buttons
* …
|
nt_selection.fig
|
1.0 KB
|
12848
|
10 years
|
westram |
* reintegrates 'fix' into 'trunk'
- removes calls to …
|
nt_sort.fig
|
1.1 KB
|
11798
|
11 years
|
westram |
* reintegrates 'macros' into 'trunk'
- fixes #485
- implements …
|
optimize.fig
|
640 bytes
|
12709
|
10 years
|
westram |
* button text expanded in [12689]
- did not fit into button
- …
|
pd_admin.fig
|
1.4 KB
|
11060
|
11 years
|
westram |
* reintegrates 'ptsfix' into 'trunk':
* adds:
- …
|
pd_main.fig
|
2.5 KB
|
6141
|
15 years
|
westram |
* spellchecked all (phew)
|
pd_match.fig
|
2.3 KB
|
11155
|
11 years
|
westram |
* probe match
- specify mismatches using inputfield (implements …
|
pd_match_iupac.fig
|
632 bytes
|
2103
|
21 years
|
westram |
- splitted off from probe match window
|
pd_reslt.fig
|
434 bytes
|
8762
|
13 years
|
westram |
* load/save for selection lists
- generic code can be configured …
|
pd_spec.fig
|
2.2 KB
|
7987
|
13 years
|
westram |
* support new probe match params introduced in [7986] from ARB_NT …
|
pg_select.fig
|
681 bytes
|
2
|
24 years
|
oldcode |
Initial revision
|
pm_spec.fig
|
2.3 KB
|
8757
|
13 years
|
westram |
* probe match no longer calculates different results depending on …
|
prd_main.fig
|
3.9 KB
|
480
|
23 years
|
westram |
new button for 'init from gene'
|
probeSaiColors.fig
|
1.6 KB
|
2610
|
21 years
|
yadhu |
Changes to Sai Probe Visualization Module
1. Selection of species name …
|
proteinViewer.fig
|
6.2 KB
|
4265
|
18 years
|
yadhu |
Changes to ProtView? Module
1. Added REFRESH button to ProtView? Dialog …
|
RNA3D_ChangeMolecule.fig
|
3.0 KB
|
3945
|
19 years
|
yadhu |
Changes of RNA3D Module
1. Added New PDB data files for handling large …
|
RNA3D_DisplayBases.fig
|
4.4 KB
|
3639
|
20 years
|
yadhu |
Modifications and Addition of Xfig files for RNA3D Module.
|
RNA3D_DisplayHelices.fig
|
4.6 KB
|
3941
|
19 years
|
yadhu |
Changes to RNA3D module
1. Now, it can handle Large Subunit rRNA as well.
|
RNA3D_DisplayOptions.fig
|
4.1 KB
|
3639
|
20 years
|
yadhu |
Modifications and Addition of Xfig files for RNA3D Module.
|
RNA3D_Help.fig
|
5.4 KB
|
6141
|
15 years
|
westram |
* spellchecked all (phew)
|
RNA3D_SeqMapping.fig
|
5.0 KB
|
3940
|
19 years
|
yadhu |
Changes to RNA3D program:
1. Added sychronization of colors with the …
|
saiColorRange.fig
|
1.5 KB
|
4252
|
18 years
|
yadhu |
Added "set color" button to VisualizeSAI function.
|
save_as.fig
|
1.2 KB
|
2733
|
21 years
|
westram |
redesigned
|
sec_bonddef.fig
|
391 bytes
|
4811
|
17 years
|
westram |
- only define x-positions, y calculated now
|
sec_display.fig
|
1.6 KB
|
4812
|
17 years
|
westram |
- several new options
|
sec_imexport.fig
|
1.0 KB
|
2
|
24 years
|
oldcode |
Initial revision
|
sel_box.fig
|
1.2 KB
|
7123
|
14 years
|
westram |
- attached elements in file browser to window-bottom
|
sel_box_nds.fig
|
1.3 KB
|
8607
|
13 years
|
westram |
merge from e4fix [8135] [8136] [8137] [8138] [8139] [8140] [8141] …
|
sel_box_tree.fig
|
1.1 KB
|
11401
|
11 years
|
westram |
* reintegrates '' into 'trunk':
- consensus trees:
* …
|
sel_box_user2.fig
|
1.4 KB
|
11401
|
11 years
|
westram |
* reintegrates '' into 'trunk':
- consensus trees:
* …
|
sel_box_user3.fig
|
1.5 KB
|
8607
|
13 years
|
westram |
merge from e4fix [8135] [8136] [8137] [8138] [8139] [8140] [8141] …
|
sel_box_user.fig
|
1.3 KB
|
8607
|
13 years
|
westram |
merge from e4fix [8135] [8136] [8137] [8138] [8139] [8140] [8141] …
|
select_simple.fig
|
383 bytes
|
8696
|
13 years
|
westram |
* merge from saiali log:branches/saiali@8635-8695
- unalign center …
|
seq_quality.fig
|
4.9 KB
|
6141
|
15 years
|
westram |
* spellchecked all (phew)
|
sl_l_box.fig
|
926 bytes
|
8762
|
13 years
|
westram |
* load/save for selection lists
- generic code can be configured …
|
sl_s_box.fig
|
1.0 KB
|
8762
|
13 years
|
westram |
* load/save for selection lists
- generic code can be configured …
|
stat_main.fig
|
394 bytes
|
2
|
24 years
|
oldcode |
Initial revision
|
status.fig
|
852 bytes
|
6050
|
15 years
|
westram |
* removed frame from status window (use 2 points to set size). ARB …
|
submiss.fig
|
1.2 KB
|
1070
|
22 years
|
westram |
added help
|
trackali.fig
|
775 bytes
|
4673
|
17 years
|
westram |
- sequence/alignment change tracker
|
transdna.fig
|
1.3 KB
|
12667
|
10 years
|
westram |
* reintegrates 'alilink' into 'trunk'
- fixes #419, #145, #563
* …
|
transpro.fig
|
1.6 KB
|
2388
|
21 years
|
westram |
toggle to write 'transl_table' and 'codon_start'
|
visualizeSAI.fig
|
3.8 KB
|
6141
|
15 years
|
westram |
* spellchecked all (phew)
|