root/tags/arb_5.3

Name Size Rev Age Last Change
../
AISC 5968 3 years westram: * new flag -w to aisc_mkpt (add include wrapper) * uniform style for …
AISC_COM 6778 21 months westram: - merged [6377]+[6465]
AISC_MKPTPS 5968 3 years westram: * new flag -w to aisc_mkpt (add include wrapper) * uniform style for …
ALIV3 5894 3 years westram: * reactivated original GB_close * removed GB_exit (use GB_close) * …
ARB_GDE 6143 3 years westram: * backport [6141] (parts changing code, but only strings and comments)
ARBDB 7590 12 months westram: - if ARB can't write to /tmp, it terminated with 'unknown error'
ARBDB2 6020 3 years westram: * splitted adtools.c into multiple files (no code change)
ARBDBPP 6143 3 years westram: * backport [6141] (parts changing code, but only strings and comments)
ARBDBS 6020 3 years westram: * splitted adtools.c into multiple files (no code change)
AWT 7061 19 months westram: - backport of [7060]
AWTC 6127 3 years westram: - added some comment-pointers about code-dependencies
AWTI 6287 2 years westram: - backport [6285] [6286]
bin 6178 3 years westram: * ignores
BUGEX 5675 3 years westram: - removed automatic timestamps (the best they were good for, were …
CONSENSUS_TREE 6143 3 years westram: * backport [6141] (parts changing code, but only strings and comments)
CONVERTALN 5968 3 years westram: * new flag -w to aisc_mkpt (add include wrapper) * uniform style for …
DBSERVER 5872 3 years westram: * Changed variable transfer to sub-makefiles - most variables are now …
DIST 6143 3 years westram: * backport [6141] (parts changing code, but only strings and comments)
doc 6142 3 years westram: * backport [6141] (parts not affecting code at all, i.e. helpfiles, figs, …
EDIT 6100 3 years westram: * fix warning "format not a string literal and no format arguments" - …
EDIT4 6358 2 years westram: - backport [6353], [6354] and [6357]
EISPACK 5471 4 years westram: - ignore Makefile.bak and TAGS
etc 6142 3 years westram: * backport [6141] (parts not affecting code at all, i.e. helpfiles, figs, …
GDE 8203 7 months westram: - removed molphy (protml)
GDEHELP 8203 7 months westram: - removed molphy (protml)
GENOM 6143 3 years westram: * backport [6141] (parts changing code, but only strings and comments)
GENOM_IMPORT 6104 3 years westram: * use GB_warningf instead of GB_warning(GBS_global_string) * same for …
GL 7113 16 months westram: - merge [7112] from tags/arb_5.2 to stable
HELP_SOURCE 7487 13 months westram: * removed debug prints * removed wrong escape
ISLAND_HOPPING 5968 3 years westram: * new flag -w to aisc_mkpt (add include wrapper) * uniform style for …
JAVALIB 2 12 years oldcode: Initial revision
lib 7486 13 months westram: based on a …
MERGE 6121 3 years westram: * fixed macro ids for merge species window
MULTI_PROBE 6156 3 years westram: * backport [6155]
NALIGNER 5894 3 years westram: * reactivated original GB_close * removed GB_exit (use GB_close) * …
NAMES 6084 3 years westram: * name servers with add.field have to be started with '-fFIELD=DEFAULT' …
NAMES_COM 6084 3 years westram: * name servers with add.field have to be started with '-fFIELD=DEFAULT' …
NTREE 6358 2 years westram: - backport [6353], [6354] and [6357]
PARSIMONY 6341 2 years westram: - backport [6340]
PERL2ARB 8204 7 months westram: merge from trunk part of [7900] - fixed target 'savetest' - perl2arb …
PERL_SCRIPTS 7738 10 months westram: - merge from trunk [7737]
PGT 5825 3 years westram: * replaced GB_entry/GB_create/GB_search+GB_read_XXX by GBT_read_XXX * …
PHYLO 6072 3 years westram: * added missing and fixed broken hotkeys
PRIMER_DESIGN 6100 3 years westram: * fix warning "format not a string literal and no format arguments" - …
PROBE 8215 6 months westram: - guard truncated probe match against misunderstandings - increase match …
PROBE_COM 5876 3 years westram: typos
PROBE_DESIGN 8215 6 months westram: - guard truncated probe match against misunderstandings - increase match …
PROBE_SET 5855 3 years westram: * final followup to [5854] - GB_get_error() -> GB_await_error() where …
ptpan 6419 2 years westram: - backport [6418]
READSEQ 6287 2 years westram: - backport [6285] [6286]
RNA3D 6143 3 years westram: * backport [6141] (parts changing code, but only strings and comments)
SECEDIT 6258 3 years westram: - backport [6256]
SEQ_QUALITY 6143 3 years westram: * backport [6141] (parts changing code, but only strings and comments)
SERVERCNTRL 6100 3 years westram: * fix warning "format not a string literal and no format arguments" - …
SH 8207 6 months westram: - 10.04
SL 6287 2 years westram: - backport [6285] [6286]
SOURCE_TOOLS 8209 6 months westram: Auto version upgrade to 5.3 by devel@…
STAT 6010 3 years westram: * ST_ML * in case of error (while loading tree), set tree variables to …
TEMPLATES 6521 2 years westram: * added COMPILE_ASSERT * assert correct pointersizes for PT-server
TOOLS 6287 2 years westram: - backport [6285] [6286]
TREEGEN 5471 4 years westram: - ignore Makefile.bak and TAGS
util 8206 6 months westram: - added BRANCH_STATE
WETC 5901 3 years westram: - AW_BOOL -> bool
WINDOW 6589 2 years westram: - backport [6588]
XML 5709 3 years westram: - made depends for [5708]
XML_IMPORT 5900 3 years westram: - fixed senseless warning
!BRANCH_STATE 2.1 KB 8213 6 months westram: * update
arb_CHANGES.txt 10.5 KB 8208 6 months westram: * arb 5.3 changes
arb_DEBUG.txt 1.2 KB 578 10 years westram: *** empty log message ***
arb_install.sh 14.3 KB 6351 2 years westram: - backport [6350]
arb_INSTALL.txt 3.6 KB 7132 16 months westram: - merged [7131] to stable
arb_LICENSE.txt 10.5 KB 8203 7 months westram: - removed molphy (protml)
arb_OS_X.txt 5.5 KB 6215 3 years westram: - merged [6214]
arb_OS_X_MacPorts.txt 370 bytes 6289 2 years westram: - backport [6288]
arb_README.txt 5.9 KB 8211 6 months westram:
arb_UBUNTU.txt 1.2 KB 8207 6 months westram: - 10.04
arbsrc_README.txt 210 bytes 6289 2 years westram: - backport [6288]
arbsrc_README_gcc.txt 1.4 KB 6289 2 years westram: - backport [6288]
config.makefile.template 1.5 KB 6163 3 years westram: * backport [6161] + [6162]
demo.arb 78.3 KB 6195 3 years westram: * repaired, tree and compression optimized
Doxyfile 7.2 KB 6142 3 years westram: * backport [6141] (parts not affecting code at all, i.e. helpfiles, figs, …
Makefile 38.9 KB 7757 10 months westram: - added gcc 4.4.3 to stable
README 0.7 KB 5390 4 years westram: - TAB-Ex
  • Property svn:ignore set to
    *.last_gcc
    ARB_SOURCE_DOC
    ChangeLog
    INCLUDE
    LIBLINK
    MAKEBIN
    PERL5
    arb.tgz
    arbsrc.lst
    arbsrc_*.tgz
    compile.log
    config.makefile
    demo.ARF
    demo.a[0-9][0-9]
    do_core
    TAGS
    .cdtproject
    .project
    .settings
    arbsrc.tgz
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