source: tags/ms_ra2q1

Name Size Rev Age Author Last Change
../
AISC ​ 16766   7 years westram * reintegrates 'gcc' into 'trunk' - mostly cosmetics changes * …
AISC_COM ​ 16986   7 years westram * reintegrates 'gcc' into 'trunk' - ports arb to gcc 8.1 (fixing …
AISC_MKPTPS ​ 16873   7 years westram * fix typos ("neither")
ARB_GDE ​ 17178   6 years westram * reintegrates 'gcc' into 'trunk' - complete arb port to gcc 8.1 …
ARBDB ​ 17342   6 years westram * reintegrates 'group' into 'trunk' - implements #780 * adds: …
AWT ​ 17002   7 years westram * reintegrates 'fix' into 'trunk' - fixes #721 * adds: …
AWTC ​ 16766   7 years westram * reintegrates 'gcc' into 'trunk' - mostly cosmetics changes * …
AWTI ​ 17262   6 years westram * partial merge from 'group' into 'trunk' - fixes to arb_progress …
bin ​ 17079   6 years westram * add script usable from ACI (sort words numerically)
BINDEP ​ 16919   7 years westram * reintegrates 'pvp' into 'trunk' - adds arb_calc_pvp (CLI …
BINDINGS ​ 10998   11 years westram * cflags were completely unused (untested)
BUGEX ​ 16763   7 years westram * partial merge from 'gcc' into 'trunk' - use nullptr in …
CONSENSUS_TREE ​ 17262   6 years westram * partial merge from 'group' into 'trunk' - fixes to arb_progress …
CONVERTALN ​ 16986   7 years westram * reintegrates 'gcc' into 'trunk' - ports arb to gcc 8.1 (fixing …
CORE ​ 17262   6 years westram * partial merge from 'group' into 'trunk' - fixes to arb_progress …
DBSERVER ​ 16763   7 years westram * partial merge from 'gcc' into 'trunk' - use nullptr in …
DIST ​ 17262   6 years westram * partial merge from 'group' into 'trunk' - fixes to arb_progress …
doc ​ 6141   15 years westram * spellchecked all (phew)
EDIT4 ​ 17262   6 years westram * partial merge from 'group' into 'trunk' - fixes to arb_progress …
EISPACK ​ 13443   10 years westram * reintegrates 'vectorize' into 'trunk' - adds vectorization check …
etc ​ 6141   15 years westram * spellchecked all (phew)
GDE ​ 16223   7 years westram * reintegrates 'cover' into 'trunk' - fixes compilation with …
GDEHELP ​ 16575   7 years westram * mention raxml versions numbers (in help and menus)
GENOM ​ 17262   6 years westram * partial merge from 'group' into 'trunk' - fixes to arb_progress …
GENOM_IMPORT ​ 16766   7 years westram * reintegrates 'gcc' into 'trunk' - mostly cosmetics changes * …
GFX ​ 12766   10 years epruesse attempt at building an icon for ARB databases
GL ​ 16961   7 years westram * partial merge from 'fix' into 'trunk' - refactored …
HEADERLIBS ​ 16266   7 years westram * HEADERLIBS - wrap submake - fix tar option - dont be verbose
HELP_SOURCE ​ 17349   6 years westram * add + document configs for - reporting transfer quality - …
ISLAND_HOPPING ​ 16763   7 years westram * partial merge from 'gcc' into 'trunk' - use nullptr in …
lib ​ 17350   6 years westram * GUI cosmetic
MERGE ​ 17262   6 years westram * partial merge from 'group' into 'trunk' - fixes to arb_progress …
MULTI_PROBE ​ 17262   6 years westram * partial merge from 'group' into 'trunk' - fixes to arb_progress …
NALIGNER ​ 16986   7 years westram * reintegrates 'gcc' into 'trunk' - ports arb to gcc 8.1 (fixing …
NAMES ​ 16766   7 years westram * reintegrates 'gcc' into 'trunk' - mostly cosmetics changes * …
NAMES_COM ​ 16986   7 years westram * reintegrates 'gcc' into 'trunk' - ports arb to gcc 8.1 (fixing …
NTREE ​ 17349   6 years westram * add + document configs for - reporting transfer quality - …
PARSIMONY ​ 17336   6 years westram * typos - some had two good language skills ;-) - fix some …
PERL2ARB ​ 16763   7 years westram * partial merge from 'gcc' into 'trunk' - use nullptr in …
PERL_SCRIPTS ​ 17079   6 years westram * add script usable from ACI (sort words numerically)
PERLTOOLS ​ 16766   7 years westram * reintegrates 'gcc' into 'trunk' - mostly cosmetics changes * …
PHYLO ​ 17262   6 years westram * partial merge from 'group' into 'trunk' - fixes to arb_progress …
PRIMER_DESIGN ​ 17262   6 years westram * partial merge from 'group' into 'trunk' - fixes to arb_progress …
PROBE ​ 17262   6 years westram * partial merge from 'group' into 'trunk' - fixes to arb_progress …
PROBE_COM ​ 16986   7 years westram * reintegrates 'gcc' into 'trunk' - ports arb to gcc 8.1 (fixing …
PROBE_DESIGN ​ 17262   6 years westram * partial merge from 'group' into 'trunk' - fixes to arb_progress …
PROBE_SET ​ 16766   7 years westram * reintegrates 'gcc' into 'trunk' - mostly cosmetics changes * …
ptpan ​ 13443   10 years westram * reintegrates 'vectorize' into 'trunk' - adds vectorization check …
READSEQ ​ 15411   8 years westram * fix warnings caused by converted documentation - conversion of …
RNA3D ​ 16961   7 years westram * partial merge from 'fix' into 'trunk' - refactored …
RNACMA ​ 16766   7 years westram * reintegrates 'gcc' into 'trunk' - mostly cosmetics changes * …
SECEDIT ​ 16986   7 years westram * reintegrates 'gcc' into 'trunk' - ports arb to gcc 8.1 (fixing …
SEQ_QUALITY ​ 17262   6 years westram * partial merge from 'group' into 'trunk' - fixes to arb_progress …
SERVERCNTRL ​ 16766   7 years westram * reintegrates 'gcc' into 'trunk' - mostly cosmetics changes * …
SH ​ 16766   7 years westram * reintegrates 'gcc' into 'trunk' - mostly cosmetics changes * …
SL ​ 17336   6 years westram * typos - some had two good language skills ;-) - fix some …
SOURCE_TOOLS ​ 17342   6 years westram * reintegrates 'group' into 'trunk' - implements #780 * adds: …
STAT ​ 17110   6 years westram * reintegrates 'tree' into 'trunk' - implements #735 * adds: …
TEMPLATES ​ 16986   7 years westram * reintegrates 'gcc' into 'trunk' - ports arb to gcc 8.1 (fixing …
TOOLS ​ 17178   6 years westram * reintegrates 'gcc' into 'trunk' - complete arb port to gcc 8.1 …
TREEGEN ​ 16766   7 years westram * reintegrates 'gcc' into 'trunk' - mostly cosmetics changes * …
UNIT_TESTER ​ 17348   6 years westram * applying ACI to groupname only had an effect together with overwrite …
util ​ 16873   7 years westram * fix typos ("neither")
WETC ​ 16763   7 years westram * partial merge from 'gcc' into 'trunk' - use nullptr in …
WINDOW ​ 17337   6 years westram * fix poll mode HACK - fix compilation (USE_STATPOLL) * …
XML ​ 16763   7 years westram * partial merge from 'gcc' into 'trunk' - use nullptr in …
XML_IMPORT ​ 16766   7 years westram * reintegrates 'gcc' into 'trunk' - mostly cosmetics changes * …
arb_CHANGES.txt 23.7 KB ​ 17345   6 years westram * updated
arb_install.sh 14.4 KB ​ 17114   6 years westram * only refer to /etc/bash.bashrc (for global alias) * add …
arb_INSTALL.txt 4.6 KB ​ 16437   7 years westram * ignore failures in target 'rmbak' - they occur with 12+ cpus; …
arb_LICENSE.txt 11.1 KB ​ 15365   8 years westram * allow use of selected parts of arb source in GPL licensed projects
arb_OS_X.txt 5.4 KB ​ 14411   9 years westram * fix svn-access URLs [Note: test-commit to new server from svn+ssh WC]
arb_OS_X_MacPorts.txt 370 bytes ​ 6288   15 years westram * include ALL arb_*.txt into release tarball * renamed …
arb_PUBLIB_LICENSE.txt 2.2 KB ​ 15367   8 years epruesse revert … misunderstood the meaning of the file name …
arb_README.txt 7.4 KB ​ 14141   9 years westram * "ressource" → "resource"
arb_UBUNTU.txt 1.3 KB ​ 14798   9 years westram * fix Ubuntu 16.04 build - add gcc 5.3.1 * fix isnan/isinf …
arbsrc_README.txt 210 bytes ​ 6288   15 years westram * include ALL arb_*.txt into release tarball * renamed …
arbsrc_README_gcc.txt 2.0 KB ​ 16649   7 years westram * partial merge from 'gcc' into 'trunk' - handles #770 by reducing …
config.makefile.template 1.8 KB ​ 13077   10 years westram * reintegrates 'sanitize' into 'trunk' * adds: - …
demo.arb 102.1 KB ​ 16239   7 years westram * change default tree back to first tree
Doxyfile 62.3 KB ​ 11492   11 years westram * fix several doxygen issues (doxygen 1.6.3) - force macro …
Makefile 78.7 KB ​ 17342   6 years westram * reintegrates 'group' into 'trunk' - implements #780 * adds: …
README 717 bytes ​ 5390   16 years westram - TAB-Ex
  • Property svn:ignore set to
    *.last_gcc
    ARB_SOURCE_DOC
    ChangeLog
    INCLUDE
    PERL5
    arb.tgz
    arbsrc.lst
    arbsrc_*.tgz
    compile.log
    config.makefile
    do_core
    TAGS
    .cdtproject
    .project
    .settings
    arbsrc.tgz
    *.bak
    arb_time.log
    latest.patch
    patches.arb
    makeloc.here
    interdiff.patch
    white.patch
    latest_iwhite.patch
    nbproject
    fulldiff.patch
    untested.patch
    *.last_compiler
    arb-dev.tgz
  • Property svn:mergeinfo set to (toggle deleted branches)
    /branches/alilink11490-11577,​12419-12666,​12669-12705,​12708-12753,​12782,​12786-12787,​12801-12802,​12854,​12856-12865,​12867,​13999-14000,​14004
    /branches/help10647-10841
    /branches/stable12378-12722
    /branches/tree10290-10481,​10500-11400,​11403-11422,​11425-11487,​11556-11559,​12004-12019,​12116-12120,​15347-15373,​16921-17109
    /branches/ProbeMatchCollection13801-13922
    /branches/aci10844-11080,​16170-16373,​16376-16382,​16385-16424,​16427-16433
    /branches/addtest12468-12472,​13123-13260,​13523-13551,​13570,​13650-13653,​14319-14326,​16193-16316,​17040-17044
    /branches/bpcb10161-10208
    /branches/bpcbold10163-10164,​10180,​10182-10185,​10191-10192
    /branches/bugrep11744-11753
    /branches/check13365-13375,​13450-13457
    /branches/check213458-13465
    /branches/cleanup11876-11885,​14598-14603,​16924-16935
    /branches/cluster12869-12876
    /branches/color14896-14915,​14920-15053
    /branches/config14199-14255
    /branches/consensus14276-14424
    /branches/cover16213-16222
    /branches/customize11828-11873,​11913-11947,​11950-11967
    /branches/cxx119320-9515
    /branches/db9626-9836,​15618-15623,​15628-15639
    /branches/dbcb9731-9739
    /branches/dbsave14521-14555,​14558-14576
    /branches/dbui10305-10348
    /branches/deb11801-11814
    /branches/dev7288-7291,​7294-7296,​7824-7828,​7830,​7833-7834,​7837-7838,​7841-7843,​7845-7848,​7876-7877,​7912,​7914,​7938-7939,​7942-7943,​7967,​7969-7970,​7972-7974,​7976-7977,​9506-9507
    /branches/dev_elmar7699-8224
    /branches/dist11501-11512
    /branches/e4fix8134-8632
    /branches/errhandle15275-15278
    /branches/fix11579-11625,​11890-11901,​11904-11910,​11985-11997,​12008-12013,​12023-12042,​12049-12053,​12058-12137,​12147-12156,​12445-12456,​12806-12833,​12839-12847,​13522-13588,​14645-14667,​14810-14812,​15066-15093,​15582-15586,​15668-15672,​15870-15875,​15975-16020,​16037-16042,​16072-16076,​16107-16111,​16121-16126,​16129-16149,​16793-16798,​16922-17001,​17124-17138
    /branches/fixMergeinfo9177-9181
    /branches/fixres13270-13326,​15127-15175
    /branches/fixwarn14815-14832
    /branches/flags15098-15222,​15225-15287
    /branches/gcc12076-12079,​12995-13018,​16578-16652,​16655-16765,​16965-16985,​17164-17177
    /branches/gde14670-14785
    /branches/group15693-15702,​15733-15965,​16147-16163,​17139-17159,​17162-17341
    /branches/gtk9379,​9432
    /branches/gtk_only9554,​9698,​9745,​9749,​10108,​12404,​12406,​12408,​12763
    /branches/helptest10585-10720
    /branches/homebrew14911-14933
    /branches/io16436-16563
    /branches/keys15591-15690,​15706-15730
    /branches/macros9677-9841,​11761-11777,​11780-11797,​16484-16507
    /branches/macros29840-10082
    /branches/markers13954-14024,​14027-14196
    /branches/merge9691-9796
    /branches/mladd15377-15391,​15394-15424
    /branches/multicore16769-16879
    /branches/nds10485-10493
    /branches/oldrealign12499,​12501,​12537,​12541,​12548,​12595,​12607,​12612,​12616,​12620,​12625,​12628,​12634,​12641
    /branches/pars12894-12900,​12938-13624,​13627-13754,​13811-13815,​15428-15458
    /branches/progress17195-17259
    /branches/ptsdump8966-9000
    /branches/ptsfix8965-11059,​13960-13969
    /branches/ptsstartup9160-9446
    /branches/ptsundef9061-9358
    /branches/pvp16882-16903,​16906-16918
    /branches/random15551-15558
    /branches/rc11679-11696,​11714
    /branches/redev11088-11125
    /branches/refactor15613-15664,​15820-15851
    /branches/remote14624-14640
    /branches/sai9504-9632,​9639-11520
    /branches/saiali8634-9188
    /branches/saiexport16023-16118,​16229-16233,​17112-17120
    /branches/sanitize13023-13076,​15434-15446
    /branches/sativa12886-13068,​13071-16571
    /branches/slv13152-13190
    /branches/stable_5.08635,​8655,​9163-9164,​9166,​9171
    /branches/sync15291-15339
    /branches/textedit16448-16468
    /branches/treeTests11198-11335
    /branches/ui14588-14621
    /branches/unittest15534-15578,​16405-16411,​16807-16860
    /branches/vectorize13428-13442,​15531-16627
    /branches/warnings15468-15483,​15486-15512,​15515-15519,​15521-15528
    /branches/xpmfix9770-9776
Note: See TracBrowser for help on using the repository browser.