source: trunk

Name Size Rev Age Author Last Change
../
AISC 18730   3 years westram * remove trailing whitespace from c source.
AISC_COM 18731   3 years westram * remove generated whitespace. - code generator depended on …
AISC_MKPTPS 18959   2 years westram * reintegrates 'progress' into 'trunk' - implements #789 * adds: …
ARB_GDE 19432   9 months westram * GBT_get_alignment_len - now also reports error if …
ARBDB 19437   9 months westram * fix bogus warning […]
AWT 19495   10 days westram * rename aw_file_selection → aw_modal_file_selection to …
AWTC 19339   17 months westram * reintegrates 'refactor' into 'trunk' - eliminates old interface …
AWTI 19365   11 months westram * string splitters: - unittests for GBT_split_string: …
bin 19355   16 months westram * adds script to detect new field content in marked subset of species …
BINDEP 18437   4 years westram * reintegrates 'io' into 'trunk' * adds: log:branches/io@18428:18436
BINDINGS 18729   3 years westram * eliminate trailing whitespace from Makefiles.
BUGEX 18730   3 years westram * remove trailing whitespace from c source.
CONSENSUS_TREE 18959   2 years westram * reintegrates 'progress' into 'trunk' - implements #789 * adds: …
CONVERTALN 18959   2 years westram * reintegrates 'progress' into 'trunk' - implements #789 * adds: …
CORE 19430   9 months westram * un-inline CharPtrArray::remove to get rid of vectorizer …
DBSERVER 18959   2 years westram * reintegrates 'progress' into 'trunk' - implements #789 * adds: …
DIST 19432   9 months westram * GBT_get_alignment_len - now also reports error if …
doc 6141   15 years westram * spellchecked all (phew)
EDIT4 19495   10 days westram * rename aw_file_selection → aw_modal_file_selection to …
EISPACK 18730   3 years westram * remove trailing whitespace from c source.
etc 6141   15 years westram * spellchecked all (phew)
GDE 19480   8 months westram * reintegrates 'gde' into 'trunk' * adds: log:branches/gde@19460:19479
GDEHELP 19234   21 months westram * reintegrates 'gde' into 'trunk' * adds: log:branches/gde@19228:19233
GENOM 19365   11 months westram * string splitters: - unittests for GBT_split_string: …
GENOM_IMPORT 18959   2 years westram * reintegrates 'progress' into 'trunk' - implements #789 * adds: …
GFX 12766   10 years epruesse attempt at building an icon for ARB databases
GL 19447   9 months westram * suppression of warnings for source-subtrees: - comment + warn …
HEADERLIBS 18634   3 years westram * reintegrates 'root' into 'trunk' - implements #449 * adds: …
HELP_SOURCE 19489   7 months westram * reintegrates 'macros' into 'trunk' * implements #856 * adds: …
ISLAND_HOPPING 19448   9 months westram * enable + fix warnings in ISLAND_HOPPING.
lib 19489   7 months westram * reintegrates 'macros' into 'trunk' * implements #856 * adds: …
MERGE 19365   11 months westram * string splitters: - unittests for GBT_split_string: …
MULTI_PROBE 19365   11 months westram * string splitters: - unittests for GBT_split_string: …
NALIGNER 19393   10 months westram * reintegrates 'ali' into 'trunk' - refactored misused enum - …
NAMES 18730   3 years westram * remove trailing whitespace from c source.
NAMES_COM 18959   2 years westram * reintegrates 'progress' into 'trunk' - implements #789 * adds: …
NTREE 19432   9 months westram * GBT_get_alignment_len - now also reports error if …
PARSIMONY 19248   20 months westram * rename GBT_add_new_changekey → …
PERL2ARB 19493   4 months westram * homebrew build looked for wrong lib-suffix. patch from jan. thx :) …
PERL_SCRIPTS 19355   16 months westram * adds script to detect new field content in marked subset of species …
PERLTOOLS 19445   9 months westram * check all A_CC calls (=plain C compilations) whether they are used.
PHYLO 19206   21 months westram * reintegrates 'ali' into 'trunk' * adds: log:branches/ali@19183:19205
PRIMER_DESIGN 19206   21 months westram * reintegrates 'ali' into 'trunk' * adds: log:branches/ali@19183:19205
PROBE 19431   9 months westram * fix NDEBUG warnings (gcc 10.2) - by simplifying …
PROBE_COM 18959   2 years westram * reintegrates 'progress' into 'trunk' - implements #789 * adds: …
PROBE_DESIGN 19365   11 months westram * string splitters: - unittests for GBT_split_string: …
PROBE_SET 18730   3 years westram * remove trailing whitespace from c source.
READSEQ 19452   9 months westram * get rid of tmpnam().
RNA3D 19206   21 months westram * reintegrates 'ali' into 'trunk' * adds: log:branches/ali@19183:19205
RNACMA 19432   9 months westram * GBT_get_alignment_len - now also reports error if …
SECEDIT 19432   9 months westram * GBT_get_alignment_len - now also reports error if …
SEQ_QUALITY 19425   10 months westram * reintegrates 'ali' into 'trunk' - refactorings + fixes related …
SERVERCNTRL 19297   18 months westram * reintegrates 'refactor' into 'trunk' - refactored MULTI_PROBE to …
SH 19494   2 months westram * collection of sysinfo terminated with error - caused by …
SL 19489   7 months westram * reintegrates 'macros' into 'trunk' * implements #856 * adds: …
SOURCE_TOOLS 19449   9 months westram * shadow-location does appear as warning AND note (depending on gcc …
STAT 19432   9 months westram * GBT_get_alignment_len - now also reports error if …
TEMPLATES 19444   9 months westram * add header (fixes previous commit)
TOOLS 19446   9 months westram * introduce onlyC_flags - flags used for C compilation only. …
TREEGEN 19446   9 months westram * introduce onlyC_flags - flags used for C compilation only. …
UNIT_TESTER 19433   9 months westram * accept duplicate symbols (i.e. symbols with multiple definition …
util 19441   9 months westram * provide source etc. by debian11 buildhost.
WETC 19489   7 months westram * reintegrates 'macros' into 'trunk' * implements #856 * adds: …
WINDOW 19495   10 days westram * rename aw_file_selection → aw_modal_file_selection to …
XML 18725   3 years westram * rename CPP_OBJECTS → OBJECTS.
.gitignore 429 bytes ​ 19245   20 months westram * reintegrates 'sina' into 'trunk' - build/deliver sina together …
arb_CHANGES.txt 26.7 KB ​ 19393   10 months westram * reintegrates 'ali' into 'trunk' - refactored misused enum - …
arb_install.sh 20.7 KB ​ 19266   20 months westram * replace realpath locally in install script - cannot use …
arb_INSTALL.txt 6.0 KB ​ 19492   5 months westram * mention libgomp1 (required by FastTreeMP)
arb_LICENSE.txt 11.0 KB ​ 18697   3 years westram * full update from child 'stable' into 'trunk' - merge changes …
arb_OS_X.txt 5.3 KB ​ 18781   3 years westram * reintegrates 'help' into 'trunk' - relocate help sources * …
arb_OS_X_MacPorts.txt 370 bytes ​ 6288   14 years westram * include ALL arb_*.txt into release tarball * renamed …
arb_PUBLIB_LICENSE.txt 2.2 KB ​ 15367   7 years epruesse revert … misunderstood the meaning of the file name …
arb_README.txt 7.1 KB ​ 18735   3 years westram * fix another obsolete URL
arb_UBUNTU.txt 1.1 KB ​ 19428   9 months westram * add dependencies to make + time. * call apt-get …
arbsrc_README.txt 210 bytes ​ 6288   14 years westram * include ALL arb_*.txt into release tarball * renamed …
arbsrc_README_gcc.txt 2.0 KB ​ 16649   6 years westram * partial merge from 'gcc' into 'trunk' - handles #770 by reducing …
config.makefile.template 1.9 KB ​ 19245   20 months westram * reintegrates 'sina' into 'trunk' - build/deliver sina together …
demo.arb 102.1 KB ​ 16239   7 years westram * change default tree back to first tree
Doxyfile 104.7 KB ​ 17645   5 years westram update doxygen docs: - updated obsolete setting using "doxygen -u". - …
Makefile 87.6 KB ​ 19446   9 months westram * introduce onlyC_flags - flags used for C compilation only. …
README 28 bytes ​ 18702   3 years westram * full update from child 'stable' into 'trunk' * adds: …
  • Property svn:ignore set to
    *.last_gcc
    ARB_SOURCE_DOC
    ChangeLog
    INCLUDE
    PERL5
    arb.tgz
    arbsrc.lst
    arbsrc_*.tgz
    compile.log
    config.makefile
    do_core
    TAGS
    .cdtproject
    .project
    .settings
    arbsrc.tgz
    *.bak
    arb_time.log
    patches.arb
    makeloc.here
    nbproject
    *.last_compiler
    TAGS*.tmp
    .git
    current.patch
    staged.patch
    unstaged.patch
    build.log
    arb-sina-fat.tgz
  • Property svn:mergeinfo set to (toggle deleted branches)
    /branches/ali19183-19205,​19357-19424
    /branches/alilink11490-11577,​12419-12666,​12669-12705,​12708-12753,​12782,​12786-12787,​12801-12802,​12854,​12856-12865,​12867,​13999-14000,​14004
    /branches/help10647-10841,​18763-18780
    /branches/stable12378-12722,​15216,​18606,​18690-18701,​18903-18906,​18908
    /branches/tree10290-10481,​10500-11400,​11403-11422,​11425-11487,​11556-11559,​12004-12019,​12116-12120,​15347-15373,​16921-17109,​18666-18703
    /branches/ProbeMatchCollection13801-13922
    /branches/aci10844-11080,​16170-16373,​16376-16382,​16385-16424,​16427-16433
    /branches/addtest12468-12472,​13123-13260,​13523-13551,​13570,​13650-13653,​14319-14326,​16193-16316,​17040-17044
    /branches/bpcb10161-10208
    /branches/bpcbold10163-10164,​10180,​10182-10185,​10191-10192
    /branches/bugfix18196-18199
    /branches/bugrep11744-11753
    /branches/check13365-13375,​13450-13457
    /branches/check213458-13465
    /branches/cleanup11876-11885,​14598-14603,​16924-16935,​17627-17650,​18105-18112
    /branches/clone17813-17835
    /branches/cluster12869-12876
    /branches/color14896-14915,​14920-15053
    /branches/config14199-14255,​17733-17737
    /branches/consensus14276-14424
    /branches/cover16213-16222
    /branches/customize11828-11873,​11913-11947,​11950-11967
    /branches/cxx119320-9515
    /branches/db9626-9836,​15618-15623,​15628-15639
    /branches/dbcb9731-9739
    /branches/dbsave14521-14555,​14558-14576
    /branches/dbui10305-10348,​17881-17889
    /branches/deb11801-11814
    /branches/dev7288-7291,​7294-7296,​7824-7828,​7830,​7833-7834,​7837-7838,​7841-7843,​7845-7848,​7876-7877,​7912,​7914,​7938-7939,​7942-7943,​7967,​7969-7970,​7972-7974,​7976-7977,​9506-9507
    /branches/dev_elmar7699-8224
    /branches/dist11501-11512
    /branches/e4fix8134-8632
    /branches/errhandle15275-15278
    /branches/fix11579-11625,​11890-11901,​11904-11910,​11985-11997,​12008-12013,​12023-12042,​12049-12053,​12058-12137,​12147-12156,​12445-12456,​12806-12833,​12839-12847,​13522-13588,​14645-14667,​14810-14812,​15066-15093,​15582-15586,​15668-15672,​15870-15875,​15975-16020,​16037-16042,​16072-16076,​16107-16111,​16121-16126,​16129-16149,​16793-16798,​16922-17001,​17124-17138,​17380-17395,​17480-17592,​17596-18127,​18131-18167,​18189-18327,​18331-18351
    /branches/fixMergeinfo9177-9181
    /branches/fixres13270-13326,​15127-15175
    /branches/fixwarn14815-14832
    /branches/flags15098-15222,​15225-15287
    /branches/fts17653-18088,​18090-18094,​18177-18185
    /branches/gcc12076-12079,​12995-13018,​16578-16652,​16655-16765,​16965-16985,​17164-17177,​17850-17876
    /branches/gde14670-14785,​19228-19233,​19460-19479
    /branches/group15693-15702,​15733-15965,​16147-16163,​17139-17159,​17162-17341
    /branches/gtk9379,​9432
    /branches/gtk_only9554,​9698,​9745,​9749,​10108,​12404,​12406,​12408,​12763
    /branches/gui17754-18092
    /branches/helptest10585-10720
    /branches/homebrew14911-14933
    /branches/io16436-16563,​18428-18436
    /branches/keys15591-15690,​15706-15730
    /branches/macros9677-9841,​11761-11777,​11780-11797,​16484-16507,​19482-19488
    /branches/macros29840-10082
    /branches/markers13954-14024,​14027-14196
    /branches/merge9691-9796
    /branches/mix17631-17633,​17637-17640
    /branches/mladd15377-15391,​15394-15424
    /branches/multicore16769-16879
    /branches/nds10485-10493,​18843-18882
    /branches/oldrealign12499,​12501,​12537,​12541,​12548,​12595,​12607,​12612,​12616,​12620,​12625,​12628,​12634,​12641
    /branches/opengl18367-18372
    /branches/optional17481-17568
    /branches/pars12894-12900,​12938-13624,​13627-13754,​13811-13815,​15428-15458
    /branches/progress17195-17259,​18885-18958
    /branches/ptsdump8966-9000
    /branches/ptsfix8965-11059,​13960-13969
    /branches/ptsstartup9160-9446
    /branches/ptsundef9061-9358
    /branches/pvp16882-16903,​16906-16918
    /branches/random15551-15558
    /branches/rc11679-11696,​11714
    /branches/redev11088-11125
    /branches/refactor15613-15664,​15820-15851,​19286-19345
    /branches/remote14624-14640
    /branches/root18451-18633
    /branches/sai9504-9632,​9639-11520
    /branches/saiali8634-9188
    /branches/saicalc18141-18310
    /branches/saiexport16023-16118,​16229-16233,​17112-17120
    /branches/sanitize13023-13076,​15434-15446
    /branches/sativa12886-13068,​13071-16571
    /branches/sina18984-19244
    /branches/slv13152-13190
    /branches/split19077-19099,​19102-19166,​19169-19221
    /branches/stable_5.08635,​8655,​9163-9164,​9166,​9171
    /branches/svalues17357-17477
    /branches/sync15291-15339
    /branches/textedit16448-16468
    /branches/top18453-18462
    /branches/treeTests11198-11335
    /branches/ui14588-14621
    /branches/unittest15534-15578,​16405-16411,​16807-16860,​18363-18425
    /branches/vectorize13428-13442,​15531-16627
    /branches/warnings15468-15483,​15486-15512,​15515-15519,​15521-15528
    /branches/xpmfix9770-9776
Note: See TracBrowser for help on using the repository browser.