Opened 16 years ago

Closed 13 years ago

#116 closed enhancement (implemented)

Find clusters of similar sequences

Reported by: westram Owned by: westram
Priority: major Milestone:
Component: ARB_DIST Version:
Keywords: Cc:

Description (last modified by westram)

  • find clusters of similar sequences
    • input:
      • similarity threshold (max. distance inside the cluster)
      • minimum cluster size
    • list all clusters in a listbox
    • functions for clusters
      • selecting a cluster selects the representative, marks species in selected cluster and unmarks the rest according to these toggles:
        • mark selected cluster
        • don't mark representatives
  • The representative is the species inside the cluster, with the least mean-distance to all other cluster members.
  • The clusters represent so called OTUs (Operational Taxonomic Units)

Change History (4)

comment:1 Changed 16 years ago by westram

  • Description modified (diff)

comment:2 Changed 14 years ago by westram

  • Description modified (diff)
  • Owner changed from devel to westram
  • Status changed from new to assigned

comment:3 Changed 14 years ago by westram

  • basically implemented by [6243]

comment:4 Changed 13 years ago by westram

  • Resolution set to implemented
  • Status changed from assigned to closed

was implemented with [6280]

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