Opened 15 years ago
Closed 15 years ago
#172 closed defect (fixed)
genbank_mulit.ift import filter does not work with genbank files
| Reported by: | fog | Owned by: | devel |
|---|---|---|---|
| Priority: | critical | Milestone: | |
| Component: | no idea | Version: | SVN |
| Keywords: | Cc: | epruesse@… |
Description
Some problem in the Perl skript I can not fix.. [Action: 'perl $ARBHOME/PERL_SCRIPTS/ARBTOOLS/IFTHELP/genbank_gen_long_features.pl < /megx/home/fog/arb/testdb/protein/aconitase_1_dna.gb > /tmp/aconitase_1_dna.gb_fog_2222_0.tmp'] Unexpected case (expected new feature) at /arb/software/arbsvn_5924M_tum64/PERL_SCRIPTS/ARBTOOLS/IFTHELP/genbank_gen_long_features.pl line 61, <STDIN> line 109. in line 34 of inputfile
Doe salso not work with Dec 2007 version - maybe a change in the Genbank Format Example file and importfilter is attached.
Attachments (4)
Change History (8)
Changed 15 years ago by fog
Changed 15 years ago by fog
Changed 15 years ago by fog
comment:1 Changed 15 years ago by fog
Changed 15 years ago by epruesse
comment:2 Changed 15 years ago by epruesse
The perl script allows only [a-z] for feature names. gb_multi_perl changes this to also allow underscores.
comment:3 Changed 15 years ago by epruesse
(with gb_multi_perl I mean the attached patch, not a function call 
comment:4 Changed 15 years ago by westram
- Resolution set to fixed
- Status changed from new to closed
- fixed by [5937]
see also http://bugs.arb-home.de/ticket/101