Opened 16 years ago

Closed 15 years ago

#101 closed defect (fixed)

Import of Genbank Files does not work

Reported by: fog Owned by: meierh
Priority: major Milestone:
Component: no idea Version: release_20071207
Keywords: Cc:


When importing 28S sequences from Genbank - see attachment for an example file the importer gives the following error messages:

16:31.04 Error: Cannot find start of file: Wrong format or empty file reading file /megx/home/fog/arb/arbref/ref_parc/LSU_93/release/ 16:31.04 Error in 'perl $ARBHOME/PERL_SCRIPTS/IFTHELP/ < /megx/home/fog/arb/arbref/ref_parc/LSU_93/release/ > /tmp/sequences_28S.gb_27907'

On console: Unexpected case (expected new feature) at /arb/software/arbmgg071207_32/PERL_SCRIPTS/IFTHELP/ line 63, ≠ line 3034. in line 37 of inputfile

Attachments (1) (154.5 KB) - added by fog 16 years ago.

Download all attachments as: .zip

Change History (4)

Changed 16 years ago by fog

comment:1 Changed 15 years ago by meierh

  • Owner changed from devel to meierh
  • Status changed from new to assigned

not observed with svn-version 5959 64-bit (using genbank_multi.ift - filter) on Opensuse 10.3

comment:2 Changed 15 years ago by fog

This has already been fixed by Elmar see

comment:3 Changed 15 years ago by westram

  • Resolution set to fixed
  • Status changed from assigned to closed
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