Opened 16 years ago
Closed 15 years ago
#101 closed defect (fixed)
Import of Genbank Files does not work
| Reported by: | fog | Owned by: | meierh |
|---|---|---|---|
| Priority: | major | Milestone: | |
| Component: | no idea | Version: | release_20071207 |
| Keywords: | Cc: |
Description
When importing 28S sequences from Genbank - see attachment for an example file the importer gives the following error messages:
16:31.04 Error: Cannot find start of file: Wrong format or empty file reading file /megx/home/fog/arb/arbref/ref_parc/LSU_93/release/sequences_28S.gb 16:31.04 Error in 'perl $ARBHOME/PERL_SCRIPTS/IFTHELP/genbank_gen_long_features.pl < /megx/home/fog/arb/arbref/ref_parc/LSU_93/release/sequences_28S.gb > /tmp/sequences_28S.gb_27907'
On console: Unexpected case (expected new feature) at /arb/software/arbmgg071207_32/PERL_SCRIPTS/IFTHELP/genbank_gen_long_features.pl line 63, ≠ line 3034. in line 37 of inputfile
Attachments (1)
Change History (4)
Changed 16 years ago by fog
comment:1 Changed 15 years ago by meierh
- Owner changed from devel to meierh
- Status changed from new to assigned
comment:2 Changed 15 years ago by fog
This has already been fixed by Elmar see http://bugs.arb-home.de/ticket/172
comment:3 Changed 15 years ago by westram
- Resolution set to fixed
- Status changed from assigned to closed
not observed with svn-version 5959 64-bit (using genbank_multi.ift - filter) on Opensuse 10.3