Opened 10 years ago

Closed 6 years ago

#233 closed defect (duplicate)

"Global optimization of marked visible nodes" in ARB Parsimony crashes with "stack overflowwhen running on tree_SSURef_1200_slv_102.

Reported by: guest Owned by: devel
Priority: major Milestone:
Component: ARB_PARSIMONY Version: SVN
Keywords: reported by meierh Cc:

Description

ARB: Loading '/local/scratch/meierh/molecular_data/rRNA_databases/silva_dbs/silva_102/SSURef_102_SILVA_12_02_10_opt.arb' done

[Action: 'arb_pars &']

  • memsize(used by ARB) = 23488362 k

* FATAL ERROR * 0 in AP_STACK:push() Stack owerflow! Error: 'AP_ERR[1]' Can't continue - terminating..


/local/scratch/meierh/ARB_SVN_6192/trunk/lib/libARBDB.so(_ZN13BackTraceInfoC1Em+0x2e)[0x7f65a51f3ece] /local/scratch/meierh/ARB_SVN_6192/trunk/lib/libARBDB.so(_Z18GBK_dump_backtraceP8_IO_FILEPKc+0x16)[0x7f65a51f24c6] /local/scratch/meierh/ARB_SVN_6192/trunk/lib/libARBDB.so(_Z13GBK_terminatePKc+0x49)[0x7f65a51f25d9] arb_pars(_ZN8AP_STACK4pushEPv+0x8d)[0x43123d] arb_pars(_ZN12AP_tree_nlen8set_rootEv+0x3d)[0x4330bd] arb_pars(_ZN12AP_tree_edge7nni_rekEbRiib10AP_BL_MODEP12AP_tree_nlen+0x35c)[0x436bac] arb_pars(_ZN12AP_tree_nlen18nn_interchange_rekEbRii10AP_BL_MODEb+0x68)[0x432958] arb_pars(_Z17PARS_optimizer_cbP7AP_tree+0x91)[0x42fe41] arb_pars[0x42cd9f] /local/scratch/meierh/ARB_SVN_6192/trunk/lib/libWINDOW.so(_ZN12AW_cb_struct12run_callbackEv+0x5a)[0x7f65a4f9d9aa] /local/scratch/meierh/ARB_SVN_6192/trunk/lib/libWINDOW.so(_Z18AW_server_callbackP10_WidgetRecPvS1_+0xb8)[0x7f65a4f9e1b8] /usr/lib/libXt.so.6(XtCallCallbackList?+0x130)[0x7f65a41ddc70] /usr/lib/libXm.so.3[0x7f65a492d007] /usr/lib/libXt.so.6[0x7f65a421614d] /usr/lib/libXt.so.6[0x7f65a42163ed] /usr/lib/libXt.so.6(_XtTranslateEvent+0x606)[0x7f65a4216bb6] /usr/lib/libXt.so.6(XtDispatchEventToWidget?+0x605)[0x7f65a41ec485] /usr/lib/libXt.so.6[0x7f65a41ecb1f] /usr/lib/libXt.so.6(XtDispatchEvent?+0xb1)[0x7f65a41eba31] /usr/lib/libXt.so.6(XtAppMainLoop?+0x4b)[0x7f65a41ebbdb] arb_pars(main+0x67d)[0x42a74d] /lib/libc.so.6(libc_start_main+0xfd)[0x7f65a3184abd] arb_pars[0x4172a9]


[Terminating with signal 11] ARB_DB_SERVER: a client died abnormally [Action: 'arb_pars &']

  • memsize(used by ARB) = 23488362 k

Change History (1)

comment:1 Changed 6 years ago by westram

  • Resolution set to duplicate
  • Status changed from new to closed

of #608

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