Opened 6 years ago

Closed 5 years ago

#519 closed defect (fixed)

creating an SAI called 'none' shows fatal effects

Reported by: westram Owned by: westram
Priority: major Milestone:
Component: Library (other) Version: SVN
Keywords: Cc:

Description

  • ARB_DIST can no longer calculate a matrix when no weights are selected
    -------------------- ARB-backtrace 'received signal 11':
    /home/ralf/ARB-bilbo/ARB.trunk.fix2/lib/libCORE.so(GBK_dump_backtrace(_IO_FILE*, char const*)+0x3b)[0x7ffff773eafb]
    /home/ralf/ARB-bilbo/ARB.trunk.fix2/lib/libCORE.so(+0x53b52)[0x7ffff7741b52]
    /lib/libc.so.6(+0x33be0)[0x7ffff54f2be0]
    /home/ralf/ARB-bilbo/ARB.trunk.fix2/bin/arb_dist(ColumnStat::calculate(AP_filter*)+0xd57)[0x5133f5]
    /home/ralf/ARB-bilbo/ARB.trunk.fix2/bin/arb_dist(WeightedFilter::create_weights(AP_filter const*) const+0x43)[0x511c8b]
    /home/ralf/ARB-bilbo/ARB.trunk.fix2/bin/arb_dist(WeightedFilter::create_aliview(char const*) const+0x38)[0x511dc6]
    /home/ralf/ARB-bilbo/ARB.trunk.fix2/bin/arb_dist[0x4aed31]
    /home/ralf/ARB-bilbo/ARB.trunk.fix2/bin/arb_dist[0x4b1516]
    
  • ARB_PARS crashes after startup if no weights selected (similar stack trace)
  • some ressource problems in
    • EDIT4/View/ColumnStat and
    • SeqQualityCheck

Change History (6)

comment:1 Changed 6 years ago by westram

  • Status changed from new to _started

comment:2 Changed 6 years ago by westram

  • change default value for SAI selection list to sth not working as DB-key (currently it's "none")

comment:3 Changed 6 years ago by westram

[12027] replaces crash by error messages

comment:4 Changed 6 years ago by westram

Awars used for SAI selections:

awar name                              default

AWAR_DOT_SAI                           ""
AWAR_SAI_VISUALIZED                    ""
GA_AWAR_SAI                            "none"
AWAR_EX_NAME_SRC                       ""
AWAR_EX_NAME_DST                       ""
tmp/con/name                           "CONSENSUS"
AWAR_MAX_FREQ_SAI_NAME                 "MAX_FREQUENCY"
AWAR_PVP_SAI                           "POS_VAR_BY_PARSIMONY"
AWAR_INSDEL_SAI                        ""
AWAR_SAI_NAME (EDIT4)                  "" 
AWAR_SAI_NAME (NTREE)                  "" 
AWAR_PHYLO_MARKERLINENAME              "markerline"
FA_AWAR_SAI_RANGE_NAME                 ""

comment:5 Changed 5 years ago by westram

two new problems:

  • [12027] propagates errors ⇒ using no weights impossible
    aw_message: 'Failed to calculate weights (Reason: Please select a column statistic)'
    
  • [12028] does not reset SAI-awars saved in properties (containing 'none'). Check them for non-tmp-awars and rename them.

comment:6 Changed 5 years ago by westram

  • Resolution set to fixed
  • Status changed from _started to closed

by [12043]

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