Opened 10 years ago

Closed 10 years ago

#521 closed defect (fixed)

"Export Column Statistic (GNUPLOT format)" window crashes if no alignment selected

Reported by: westram Owned by: westram
Priority: major Milestone:
Component: no idea Version: SVN
Keywords: Cc:

Description

Reproduce:

  • run demo.arb with attached macro

gtk-backtrace:

Error: 'illegal values in set_minmax for AWAR 'tmp/ntree/colstat_2_gnuplot/smooth_values''
Can't continue - terminating..

-------------------- ARB-backtrace 'GBK_terminate (reason above) ':
/home/ralf/ARB-bilbo/ARB.gtk.smallFix/lib/libCORE.so(GBK_dump_backtrace(_IO_FILE*, char const*)+0x3b)[0x7ffff773eafb]
/home/ralf/ARB-bilbo/ARB.gtk.smallFix/lib/libCORE.so(GBK_terminate(char const*)+0x6a)[0x7ffff773ed45]
/home/ralf/ARB-bilbo/ARB.gtk.smallFix/lib/libCORE.so(GB_warning(char const*)+0x0)[0x7ffff773ee4b]
/home/ralf/ARB-bilbo/ARB.gtk.smallFix/lib/libWINDOW.so(AW_awar_int::set_minmax(float, float)+0x51)[0x7ffff6ea4807]
/home/ralf/ARB-bilbo/ARB.gtk.smallFix/bin/arb_ntree(NT_create_colstat_2_gnuplot_window(AW_root*)+0x1a8)[0x4fd3af]

motif-backtrace:

adquery.cxx:447: Assertion '!GB_have_error()' failed

-------------------- ARB-backtrace 'ARB_SIGSEGV':
/home/ralf/ARB-bilbo/ARB.trunk.default/lib/libCORE.so(GBK_dump_backtrace(_IO_FILE*, char const*)+0x3b)[0x7ffff773eafb]
/home/ralf/ARB-bilbo/ARB.trunk.default/lib/libARBDB.so(gb_search(GBCONTAINER*, char const*, GB_TYPES, int)+0x63)[0x7ffff7ace8d9]
/home/ralf/ARB-bilbo/ARB.trunk.default/lib/libARBDB.so(GB_search(GBDATA*, char const*, GB_TYPES)+0x37)[0x7ffff7acedfb]
/home/ralf/ARB-bilbo/ARB.trunk.default/lib/libWINDOW.so(AW_awar::AW_awar(AW_VARIABLE_TYPE, char const*, char const*, double, GBDATA*, AW_root*)+0x15a)[0x7ffff6ec022e]
/home/ralf/ARB-bilbo/ARB.trunk.default/lib/libWINDOW.so(AW_root::awar_int(char const*, long, GBDATA*)+0x8d)[0x7ffff6eedad5]
/home/ralf/ARB-bilbo/ARB.trunk.default/bin/arb_ntree(NT_create_colstat_2_gnuplot_window(AW_root*)+0x185)[0x4fe9f0]

Attachments (1)

_logged.amc (421 bytes) - added by westram 10 years ago.

Download all attachments as: .zip

Change History (5)

Changed 10 years ago by westram

comment:1 Changed 10 years ago by westram

  • Owner changed from devel to westram
  • Status changed from new to _started

comment:2 follow-up: Changed 10 years ago by westram

fixed by [12051] for trunk (also fixes gtk-crash)

TODO clicking on 'Save & View' afterwards triggers SIGABRT

Program received signal SIGABRT, Aborted.
0x00007ffff54f2b65 in *__GI_raise (sig=<value optimized out>) at ../nptl/sysdeps/unix/sysv/linux/raise.c:64
64	../nptl/sysdeps/unix/sysv/linux/raise.c: No such file or directory.
	in ../nptl/sysdeps/unix/sysv/linux/raise.c
(gdb) whe
#0  0x00007ffff54f2b65 in *__GI_raise (sig=<value optimized out>) at ../nptl/sysdeps/unix/sysv/linux/raise.c:64
#1  0x00007ffff54f66b0 in *__GI_abort () at abort.c:92
#2  0x00007ffff5dac8c5 in __gnu_cxx::__verbose_terminate_handler() () from /usr/lib/libstdc++.so.6
#3  0x00007ffff5daacf6 in ?? () from /usr/lib/libstdc++.so.6
#4  0x00007ffff5daad23 in std::terminate() () from /usr/lib/libstdc++.so.6
#5  0x00007ffff5daae1e in __cxa_throw () from /usr/lib/libstdc++.so.6
#6  0x00007ffff5dab2ad in operator new(unsigned long) () from /usr/lib/libstdc++.so.6
#7  0x00007ffff5dab369 in operator new[](unsigned long) () from /usr/lib/libstdc++.so.6
#8  0x0000000000569e54 in AP_filter::init (this=0x7fffffffdaa0, size=18446744073709551615) at AP_filter.cxx:19
#9  0x000000000056a73d in AP_filter::make_permeable (this=0x7fffffffdaa0, size=18446744073709551615) at AP_filter.cxx:90
#10 0x000000000056a56b in AP_filter (this=0x7fffffffdaa0, ifilter=0xd7f430 "", zerobases=0x6f59bc "0", size=18446744073709551615) at AP_filter.cxx:62
#11 0x00000000004fdb2d in colstat_2_gnuplot_cb (aww=0xd81360, cl_column_stat=14161776, cl_mode=1) at ColumnStat_2_gnuplot.cxx:352

comment:3 in reply to: ↑ 2 Changed 10 years ago by westram

TODO clicking on 'Save & View' afterwards triggers SIGABRT

fixed by [12052]

comment:4 Changed 10 years ago by westram

  • Resolution set to fixed
  • Status changed from _started to closed

by [12054]

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