Opened 7 years ago

Last modified 4 years ago

#731 new enhancement

define compression relevance of SAIs

Reported by: westram Owned by: devel
Priority: normal Milestone: wishlist
Component: ARB_EDIT4 Version: SVN
Keywords: Cc:

Description (last modified by westram)

Motivation:

Not all SAIs are (always) relevant for selection of shown columns
(in compressed alignment view).

Examples:

  • Helix numbers:
    • if helix variants are named like "11a", "11b" … the columns containing letters will stay visible, even if no sequence contains data (behavior may be desired or undesired).
    • single digits of a helix number may "disappear" in compressed mode (should not be default)

Solutions:

  • define which characters activate columns (when occurring in SAI).
    Possibilities:
    • letters only (=default; status quo)
    • letters and digits
    • anything (but gaps?)
    • nothing (=ignore SAIs)
  • use as global setting or define for each SAI

Change History (4)

comment:1 Changed 7 years ago by westram

  • Milestone set to proposals

comment:2 Changed 6 years ago by westram

  • Milestone changed from proposals to wishlist

comment:3 Changed 5 years ago by westram

  • Description modified (diff)

comment:4 Changed 4 years ago by westram

[18462] provides a workaround for disappearing helix numbers:

  • load an SAI containing base characters where HELIX_NR contains anything
  • use SAI calculator to create such an SAI
Note: See TracTickets for help on using tickets.