Opened 8 years ago

Last modified 8 years ago

#757 new enhancement

Store more info about filter (in tree comment)

Reported by: westram Owned by:
Priority: normal Milestone: wishlist
Component: GDE Version: SVN
Keywords: parsimony arb_pars Cc:

Description (last modified by westram)

Motivation:

  • the filter applied to the sequence data used for tree reconstruction generally has a strong impact on result.
  • when comparing different results (trees) esp. the filter information should be directly accessible (e.g. allow to sort trees by filter-information; needs #758)

Information to store in tree comments:

  1. name of program
  2. name of used filter
  3. store number of resulting (i.e. effectively used) alignment columns (in exported or used sequence data), e.g. as additional tag FCOLS=<num> behind FILTER=<name>

Notes:

  • 1.+2. definitely missing for parsimony
  • check whether 1.+2. work properly for other treeing tools (esp. raxml8 which was implemented with a custom script after the last global change of tree-comment-format)

requires: #758

Change History (1)

comment:1 Changed 8 years ago by westram

  • Description modified (diff)
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