Opened 8 years ago
Last modified 8 years ago
#757 new enhancement
Store more info about filter (in tree comment)
Reported by: | westram | Owned by: | |
---|---|---|---|
Priority: | normal | Milestone: | wishlist |
Component: | GDE | Version: | SVN |
Keywords: | parsimony arb_pars | Cc: |
Description (last modified by westram)
Motivation:
- the filter applied to the sequence data used for reconstruction generally has a strong impact on result.
- when comparing different results (trees) esp. the filter information should be directly accessible (e.g. allow to sort trees by filter-information; needs #758)
Information to store in comments:
- name of program
- name of used filter
- store number of resulting (i.e. effectively used) alignment columns (in exported or used sequence data), e.g. as additional tag FCOLS=<num> behind FILTER=<name>
Notes:
- 1.+2. definitely missing for parsimony
- check whether 1.+2. work properly for other treeing tools (esp. raxml8 which was implemented with a custom script after the last global change of -comment-format)
requires: #758
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