Opened 90 minutes ago
#877 new defect
workaround raxml8 failing to setRateModel
| Reported by: | westram | Owned by: | devel |
|---|---|---|---|
| Priority: | normal | Milestone: | |
| Component: | External_tools | Version: | SVN |
| Keywords: | raxml | Cc: |
Description
RAxML8 often fails to set the rate model using the BFGS method, and fails with this error:
setRateModel: Assertion `rate >= RATE_MIN && rate <= RATE_MAX' failed.
This can be prevented by adding the CLI flag --no-bfgs.
Todo:
- add toggle for --no-bfgs to GUI
- use toggle in script arb_raxml8.sh
additionally:
- log all RAxML calls onto console ⇒ will appear in arb's run.log
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