source: branches/stable/GDE/MUSCLE/src

Name Size Rev Age Author Last Change
../
unused 11532   10 years westram SOURCE_TOOLS/svn_apply_ignores.pl --apply
aligngivenpath.cpp 21.3 KB 10390   11 years aboeckma added muscle sourcles amd makefile
aligngivenpathsw.cpp 7.1 KB 10390   11 years aboeckma added muscle sourcles amd makefile
aligntwomsas.cpp 946 bytes 10390   11 years aboeckma added muscle sourcles amd makefile
aligntwoprofs.cpp 831 bytes 10390   11 years aboeckma added muscle sourcles amd makefile
aln.cpp 4.5 KB 10390   11 years aboeckma added muscle sourcles amd makefile
alpha.cpp 5.5 KB 10390   11 years aboeckma added muscle sourcles amd makefile
alpha.h 2.0 KB 10390   11 years aboeckma added muscle sourcles amd makefile
anchors.cpp 6.1 KB 10390   11 years aboeckma added muscle sourcles amd makefile
bittraceback.cpp 3.3 KB 10390   11 years aboeckma added muscle sourcles amd makefile
blosum62.cpp 2.0 KB 10390   11 years aboeckma added muscle sourcles amd makefile
blosumla.cpp 6.5 KB 10390   11 years aboeckma added muscle sourcles amd makefile
clust.cpp 18.4 KB 10390   11 years aboeckma added muscle sourcles amd makefile
clust.h 4.5 KB 10390   11 years aboeckma added muscle sourcles amd makefile
cluster.cpp 8.3 KB 10390   11 years aboeckma added muscle sourcles amd makefile
cluster.h 2.3 KB 10390   11 years aboeckma added muscle sourcles amd makefile
clustset.h 576 bytes 10390   11 years aboeckma added muscle sourcles amd makefile
clustsetdf.h 1010 bytes 10390   11 years aboeckma added muscle sourcles amd makefile
clustsetmsa.h 1.2 KB 10390   11 years aboeckma added muscle sourcles amd makefile
clwwt.cpp 4.8 KB 10390   11 years aboeckma added muscle sourcles amd makefile
color.cpp 5.7 KB 10390   11 years aboeckma added muscle sourcles amd makefile
cons.cpp 3.1 KB 10390   11 years aboeckma added muscle sourcles amd makefile
diaglist.cpp 9.0 KB 10390   11 years aboeckma added muscle sourcles amd makefile
diaglist.h 1.8 KB 10390   11 years aboeckma added muscle sourcles amd makefile
diffobjscore.cpp 4.4 KB 10390   11 years aboeckma added muscle sourcles amd makefile
diffpaths.cpp 3.0 KB 10390   11 years aboeckma added muscle sourcles amd makefile
difftrees.cpp 10.9 KB 10390   11 years aboeckma added muscle sourcles amd makefile
difftreese.cpp 7.1 KB 10390   11 years aboeckma added muscle sourcles amd makefile
distcalc.cpp 1.9 KB 10390   11 years aboeckma added muscle sourcles amd makefile
distcalc.h 1.0 KB 10390   11 years aboeckma added muscle sourcles amd makefile
distfunc.cpp 2.4 KB 10390   11 years aboeckma added muscle sourcles amd makefile
distfunc.h 807 bytes 10390   11 years aboeckma added muscle sourcles amd makefile
distpwkimura.cpp 1.1 KB 10390   11 years aboeckma added muscle sourcles amd makefile
domuscle.cpp 7.0 KB 10390   11 years aboeckma added muscle sourcles amd makefile
dosp.cpp 1.1 KB 10390   11 years aboeckma added muscle sourcles amd makefile
dpregionlist.h 1018 bytes 10390   11 years aboeckma added muscle sourcles amd makefile
dpreglist.cpp 3.4 KB 10390   11 years aboeckma added muscle sourcles amd makefile
dpreglist.h 1.0 KB 10390   11 years aboeckma added muscle sourcles amd makefile
drawtree.cpp 919 bytes 10390   11 years aboeckma added muscle sourcles amd makefile
edgelist.cpp 1.7 KB 10390   11 years aboeckma added muscle sourcles amd makefile
edgelist.h 507 bytes 10390   11 years aboeckma added muscle sourcles amd makefile
enumopts.cpp 160 bytes 10390   11 years aboeckma added muscle sourcles amd makefile
enumopts.h 252 bytes 10390   11 years aboeckma added muscle sourcles amd makefile
enums.h 2.0 KB 10390   11 years aboeckma added muscle sourcles amd makefile
enumtostr.cpp 644 bytes 10390   11 years aboeckma added muscle sourcles amd makefile
estring.cpp 13.1 KB 10390   11 years aboeckma added muscle sourcles amd makefile
estring.h 527 bytes 10390   11 years aboeckma added muscle sourcles amd makefile
fasta2.cpp 2.4 KB 10390   11 years aboeckma added muscle sourcles amd makefile
fasta.cpp 1.2 KB 10390   11 years aboeckma added muscle sourcles amd makefile
fastclust.cpp 1.7 KB 10390   11 years aboeckma added muscle sourcles amd makefile
fastdist.cpp 1.1 KB 10390   11 years aboeckma added muscle sourcles amd makefile
fastdistjones.cpp 5.9 KB 10390   11 years aboeckma added muscle sourcles amd makefile
fastdistkbit.cpp 2.8 KB 10390   11 years aboeckma added muscle sourcles amd makefile
fastdistkmer.cpp 6.4 KB 10390   11 years aboeckma added muscle sourcles amd makefile
fastdistmafft.cpp 7.3 KB 10390   11 years aboeckma added muscle sourcles amd makefile
fastdistnuc.cpp 6.8 KB 10390   11 years aboeckma added muscle sourcles amd makefile
fastscorepath2.cpp 3.5 KB 10390   11 years aboeckma added muscle sourcles amd makefile
finddiags.cpp 3.6 KB 10390   11 years aboeckma added muscle sourcles amd makefile
finddiagsn.cpp 3.4 KB 10390   11 years aboeckma added muscle sourcles amd makefile
gapscoredimer.h 2.7 KB 10390   11 years aboeckma added muscle sourcles amd makefile
glbalign352.cpp 1.2 KB 10390   11 years aboeckma added muscle sourcles amd makefile
glbalign.cpp 3.7 KB 10390   11 years aboeckma added muscle sourcles amd makefile
glbaligndiag.cpp 4.2 KB 10390   11 years aboeckma added muscle sourcles amd makefile
glbalignla.cpp 10.2 KB 10390   11 years aboeckma added muscle sourcles amd makefile
glbalignle.cpp 10.2 KB 10390   11 years aboeckma added muscle sourcles amd makefile
glbalignns.cpp 9.2 KB 10390   11 years aboeckma added muscle sourcles amd makefile
glbalignsimple.cpp 9.0 KB 10390   11 years aboeckma added muscle sourcles amd makefile
glbalignsp.cpp 9.2 KB 10390   11 years aboeckma added muscle sourcles amd makefile
glbalignspn.cpp 10.0 KB 10390   11 years aboeckma added muscle sourcles amd makefile
glbalignss.cpp 7.2 KB 10390   11 years aboeckma added muscle sourcles amd makefile
glbalndimer.cpp 10.1 KB 10390   11 years aboeckma added muscle sourcles amd makefile
globals.cpp 5.9 KB 10390   11 years aboeckma added muscle sourcles amd makefile
globalslinux.cpp 2.8 KB 10390   11 years aboeckma added muscle sourcles amd makefile
globalsosx.cpp 1.8 KB 10390   11 years aboeckma added muscle sourcles amd makefile
globalsother.cpp 713 bytes 10390   11 years aboeckma added muscle sourcles amd makefile
globalswin32.cpp 2.3 KB 10390   11 years aboeckma added muscle sourcles amd makefile
gonnet.cpp 23.8 KB 10390   11 years aboeckma added muscle sourcles amd makefile
gonnet.h 249 bytes 10390   11 years aboeckma added muscle sourcles amd makefile
gotowt.cpp 0 bytes 10390   11 years aboeckma added muscle sourcles amd makefile
henikoffweight.cpp 2.4 KB 10390   11 years aboeckma added muscle sourcles amd makefile
henikoffweightpb.cpp 3.6 KB 10390   11 years aboeckma added muscle sourcles amd makefile
html.cpp 3.6 KB 10390   11 years aboeckma added muscle sourcles amd makefile
hydro.cpp 919 bytes 10390   11 years aboeckma added muscle sourcles amd makefile
intmath.cpp 7.5 KB 10390   11 years aboeckma added muscle sourcles amd makefile
intmath.h 5.8 KB 10390   11 years aboeckma added muscle sourcles amd makefile
local.cpp 2.0 KB 10390   11 years aboeckma added muscle sourcles amd makefile
main.cpp 1.3 KB 10390   11 years aboeckma added muscle sourcles amd makefile
makerootmsa.cpp 5.4 KB 10390   11 years aboeckma added muscle sourcles amd makefile
makerootmsab.cpp 2.0 KB 10390   11 years aboeckma added muscle sourcles amd makefile
maketree.cpp 880 bytes 10390   11 years aboeckma added muscle sourcles amd makefile
mhack.cpp 1.3 KB 10390   11 years aboeckma added muscle sourcles amd makefile
mpam200.cpp 7.9 KB 10390   11 years aboeckma added muscle sourcles amd makefile
msa2.cpp 13.7 KB 10390   11 years aboeckma added muscle sourcles amd makefile
msa.cpp 20.3 KB 10390   11 years aboeckma added muscle sourcles amd makefile
msa.h 6.1 KB 10390   11 years aboeckma added muscle sourcles amd makefile
msadist.h 821 bytes 10390   11 years aboeckma added muscle sourcles amd makefile
msadistkimura.cpp 3.5 KB 10390   11 years aboeckma added muscle sourcles amd makefile
msadistkimura.h 253 bytes 10390   11 years aboeckma added muscle sourcles amd makefile
msadistmafft.h 528 bytes 10390   11 years aboeckma added muscle sourcles amd makefile
msf.cpp 3.5 KB 10390   11 years aboeckma added muscle sourcles amd makefile
muscle.cpp 2.6 KB 10390   11 years aboeckma added muscle sourcles amd makefile
muscle.h 11.5 KB 10390   11 years aboeckma added muscle sourcles amd makefile
muscleout.cpp 2.1 KB 10390   11 years aboeckma added muscle sourcles amd makefile
nucmx.cpp 540 bytes 10390   11 years aboeckma added muscle sourcles amd makefile
nwdasimple2.cpp 14.0 KB 10390   11 years aboeckma added muscle sourcles amd makefile
nwdasimple.cpp 12.4 KB 10390   11 years aboeckma added muscle sourcles amd makefile
nwdasmall.cpp 21.9 KB 10390   11 years aboeckma added muscle sourcles amd makefile
nwrec.cpp 2.4 KB 10390   11 years aboeckma added muscle sourcles amd makefile
nwsmall.cpp 15.8 KB 10390   11 years aboeckma added muscle sourcles amd makefile
objscore2.cpp 13.5 KB 10390   11 years aboeckma added muscle sourcles amd makefile
objscore.cpp 2.3 KB 10390   11 years aboeckma added muscle sourcles amd makefile
objscore.h 1.2 KB 10390   11 years aboeckma added muscle sourcles amd makefile
objscoreda.cpp 6.9 KB 10390   11 years aboeckma added muscle sourcles amd makefile
onexception.cpp 302 bytes 10390   11 years aboeckma added muscle sourcles amd makefile
options.cpp 4.7 KB 10390   11 years aboeckma added muscle sourcles amd makefile
outweights.cpp 461 bytes 10390   11 years aboeckma added muscle sourcles amd makefile
pam200mafft.cpp 4.1 KB 10390   11 years aboeckma added muscle sourcles amd makefile
params.cpp 16.7 KB 10390   11 years aboeckma added muscle sourcles amd makefile
params.h 2.9 KB 10390   11 years aboeckma added muscle sourcles amd makefile
phy2.cpp 7.4 KB 10390   11 years aboeckma added muscle sourcles amd makefile
phy3.cpp 13.4 KB 10390   11 years aboeckma added muscle sourcles amd makefile
phy4.cpp 8.5 KB 10390   11 years aboeckma added muscle sourcles amd makefile
phy.cpp 30.2 KB 10390   11 years aboeckma added muscle sourcles amd makefile
phyfromclust.cpp 2.7 KB 10390   11 years aboeckma added muscle sourcles amd makefile
phyfromfile.cpp 5.8 KB 10390   11 years aboeckma added muscle sourcles amd makefile
physeq.cpp 2.6 KB 10390   11 years aboeckma added muscle sourcles amd makefile
phytofile.cpp 2.0 KB 10390   11 years aboeckma added muscle sourcles amd makefile
posgap.cpp 2.8 KB 10390   11 years aboeckma added muscle sourcles amd makefile
ppscore.cpp 2.0 KB 10390   11 years aboeckma added muscle sourcles amd makefile
profdb.cpp 1.2 KB 10390   11 years aboeckma added muscle sourcles amd makefile
profile.cpp 3.0 KB 10390   11 years aboeckma added muscle sourcles amd makefile
profile.h 4.4 KB 10390   11 years aboeckma added muscle sourcles amd makefile
profilefrommsa.cpp 7.5 KB 10390   11 years aboeckma added muscle sourcles amd makefile
progalign.cpp 5.4 KB 10390   11 years aboeckma added muscle sourcles amd makefile
progress.cpp 3.4 KB 10390   11 years aboeckma added muscle sourcles amd makefile
progressivealign.cpp 2.0 KB 10390   11 years aboeckma added muscle sourcles amd makefile
pwpath.cpp 9.6 KB 10390   11 years aboeckma added muscle sourcles amd makefile
pwpath.h 2.4 KB 10390   11 years aboeckma added muscle sourcles amd makefile
README.txt 945 bytes 10390   11 years aboeckma added muscle sourcles amd makefile
readmx.cpp 3.2 KB 10390   11 years aboeckma added muscle sourcles amd makefile
realigndiffs.cpp 2.8 KB 10390   11 years aboeckma added muscle sourcles amd makefile
realigndiffse.cpp 3.9 KB 10390   11 years aboeckma added muscle sourcles amd makefile
refine.cpp 1.6 KB 10390   11 years aboeckma added muscle sourcles amd makefile
refinehoriz.cpp 7.5 KB 10390   11 years aboeckma added muscle sourcles amd makefile
refinesubfams.cpp 5.9 KB 10390   11 years aboeckma added muscle sourcles amd makefile
refinetree.cpp 1.3 KB 10390   11 years aboeckma added muscle sourcles amd makefile
refinetreee.cpp 1.2 KB 10390   11 years aboeckma added muscle sourcles amd makefile
refinevert.cpp 4.0 KB 10390   11 years aboeckma added muscle sourcles amd makefile
refinew.cpp 5.3 KB 10390   11 years aboeckma added muscle sourcles amd makefile
releases.txt 203 bytes 10390   11 years aboeckma added muscle sourcles amd makefile
savebest.cpp 1.4 KB 10390   11 years aboeckma added muscle sourcles amd makefile
scoredist.cpp 3.4 KB 10390   11 years aboeckma added muscle sourcles amd makefile
scoregaps.cpp 4.4 KB 10390   11 years aboeckma added muscle sourcles amd makefile
scorehistory.cpp 2.5 KB 10390   11 years aboeckma added muscle sourcles amd makefile
scorehistory.h 508 bytes 10390   11 years aboeckma added muscle sourcles amd makefile
scorepp.cpp 2.5 KB 10390   11 years aboeckma added muscle sourcles amd makefile
seq.cpp 6.8 KB 10390   11 years aboeckma added muscle sourcles amd makefile
seq.h 1.8 KB 10390   11 years aboeckma added muscle sourcles amd makefile
seqvect.cpp 6.2 KB 10390   11 years aboeckma added muscle sourcles amd makefile
seqvect.h 1.5 KB 10390   11 years aboeckma added muscle sourcles amd makefile
setblosumweights.cpp 4.8 KB 10390   11 years aboeckma added muscle sourcles amd makefile
setgscweights.cpp 5.9 KB 10390   11 years aboeckma added muscle sourcles amd makefile
setnewhandler.cpp 612 bytes 10390   11 years aboeckma added muscle sourcles amd makefile
spfast.cpp 6.5 KB 10390   11 years aboeckma added muscle sourcles amd makefile
sptest.cpp 3.8 KB 10390   11 years aboeckma added muscle sourcles amd makefile
stabilize.cpp 621 bytes 10390   11 years aboeckma added muscle sourcles amd makefile
subfam.cpp 9.5 KB 10390   11 years aboeckma added muscle sourcles amd makefile
subfams.cpp 1.4 KB 18607   3 years westram * partial merge from 'stable' into 'trunk' * adds: …
svnmods.h 9 bytes 10390   11 years aboeckma added muscle sourcles amd makefile
svnversion.h 5 bytes 10390   11 years aboeckma added muscle sourcles amd makefile
sw.cpp 5.6 KB 10390   11 years aboeckma added muscle sourcles amd makefile
termgaps.cpp 794 bytes 10390   11 years aboeckma added muscle sourcles amd makefile
textfile.cpp 6.6 KB 10390   11 years aboeckma added muscle sourcles amd makefile
textfile.h 1.5 KB 10390   11 years aboeckma added muscle sourcles amd makefile
threewaywt.cpp 10.2 KB 10390   11 years aboeckma added muscle sourcles amd makefile
timing.h 364 bytes 10390   11 years aboeckma added muscle sourcles amd makefile
tomhydro.cpp 2.4 KB 10390   11 years aboeckma added muscle sourcles amd makefile
traceback.cpp 5.2 KB 10390   11 years aboeckma added muscle sourcles amd makefile
tracebackopt.cpp 1.4 KB 10390   11 years aboeckma added muscle sourcles amd makefile
tracebacksw.cpp 4.8 KB 10390   11 years aboeckma added muscle sourcles amd makefile
tree.h 9.3 KB 10390   11 years aboeckma added muscle sourcles amd makefile
treefrommsa.cpp 2.3 KB 10390   11 years aboeckma added muscle sourcles amd makefile
types.h 2.1 KB 10390   11 years aboeckma added muscle sourcles amd makefile
typetostr.cpp 1.5 KB 18388   4 years westram * fix potential buffer overflow (warned by gcc 7.5.0).
unixio.h 180 bytes 10390   11 years aboeckma added muscle sourcles amd makefile
upgma2.cpp 10.2 KB 10390   11 years aboeckma added muscle sourcles amd makefile
usage.cpp 1.7 KB 10390   11 years aboeckma added muscle sourcles amd makefile
validateids.cpp 3.1 KB 10390   11 years aboeckma added muscle sourcles amd makefile
version.txt 4 bytes 10390   11 years aboeckma added muscle sourcles amd makefile
vtml2.cpp 10.1 KB 10390   11 years aboeckma added muscle sourcles amd makefile
writescorefile.cpp 1.7 KB 10390   11 years aboeckma added muscle sourcles amd makefile
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