source: trunk/GDE/MAFFT/mafft-7.055-with-extensions/core

Name Size Rev Age Author Last Change
../
.gitignore 376 bytes ​ 17634   6 years westram * reintegrates 'mix' into 'trunk' * prepare arb for hybrid svn/git …
addfunctions.c 12.2 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
addsingle.c 76.3 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
blosum.c 12.8 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
blosum.h 256 bytes ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
constants.c 33.6 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
contrafoldwrap.c 7.6 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
countlen.c 1.0 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
defs.c 1.9 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
disttbfast.c 52.8 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
DNA.h 7.9 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
dndblast.c 8.7 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
dndfast4.c 5.1 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
dndfast7.c 7.2 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
dndpre2.c 3.6 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
dndpre.c 7.6 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
dndpre_score.c 944 bytes ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
dp.h 185 bytes ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
dvtditr.c 22.0 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
f2cl.c 5.3 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
Falign.c 60.4 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
Falign_localhom.c 21.1 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
fft.c 3.7 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
fft.h 287 bytes ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
fftFunctions.c 16.3 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
functions.h 30.7 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
Galign11.c 14.4 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
genalign11.c 12.9 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
genGalign11.c 9.1 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
getlag.c 10.8 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
Halignmm.c 37.8 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
io.c 116.2 KB ​ 19480   17 months westram * reintegrates 'gde' into 'trunk' * adds: log:branches/gde@19460:19479
iteration.c 9.1 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
JTT.c 8.3 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
Lalign11.c 18.2 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
Lalignmm.c 53.6 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
mafft-distance.c 8.4 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
mafft-homologs.1 4.4 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
mafft-homologs.tmpl 8.1 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
mafft-profile.c 12.1 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
mafft.1 14.4 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
mafft.bat 292 bytes ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
mafft.tmpl 68.0 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
makedirectionlist.c 17.4 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
makedirectionlist.c.last 19.2 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
Makefile 18.6 KB ​ 19480   17 months westram * reintegrates 'gde' into 'trunk' * adds: log:branches/gde@19460:19479
makemergetable.rb 476 bytes ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
mccaskillwrap.c 10.5 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
mingw64mingw32 442 bytes ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
miyata5.h 4.5 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
miyata.h 711 bytes ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
mltaln9.c 190.6 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
mltaln.h 6.5 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
MSalign11.c 13.0 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
MSalignmm.c 39.4 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
mtxutl.c 9.0 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
mtxutl.h 1.2 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
multi2hat3s.c 8.5 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
newick2mafft.rb 2.4 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
nj.c 4.9 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
pair2hat3s.c 10.2 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
pairash.c 29.9 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
pairlara.c 21.3 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
pairlocalalign.c 73.0 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
partQalignmm.c 30.1 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
partSalignmm.c 28.2 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
Qalignmm.c 54.0 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
Ralignmm.c 32.9 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
regionalrealignment.rb 8.7 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
regtable2seq.c 4.5 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
replaceu.c 2.6 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
restoreu.c 5.0 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
rna.c 15.9 KB ​ 19480   17 months westram * reintegrates 'gde' into 'trunk' * adds: log:branches/gde@19460:19479
rnatest.c 9.8 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
SAalignmm.c 8.0 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
Salignmm.c 41.8 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
score.c 2.3 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
seq2regtable.c 1.5 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
setcore.c 10.2 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
setdirection.c 2.4 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
sextet5.c 5.9 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
share.h 323 bytes ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
splittbfast.c 82.1 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
suboptalign11.c 13.8 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
tbfast.c 57.9 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
tddis.c 17.8 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
tditeration.c 77.7 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
treeOperation.c 16.1 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
univscript.tmpl 1.3 KB ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
version.c 83 bytes ​ 10371   11 years aboeckma updated mafft version. Added extensions (no svn ignore, yet)
  • Property svn:ignore set to
    dvtditr
    contrafoldwrap
    addsingle
    mccaskillwrap
    pair2hat3s
    regtable2seq
    mafft
    dndfast7
    multi2hat3s
    mafft-homologs.rb
    pairash
    mafft-profile
    sextet5
    setcore
    seq2regtable
    f2cl
    countlen
    setdirection
    dndpre2
    replaceu
    restoreu
    makedirectionlist
    pairlocalalign
    splittbfast
    disttbfast
    score
    dndpre
    mafft-distance
    rnatest
    tbfast
    version
    dndblast
    getlag
    *.bak
    *.gcno
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