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unused
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SOURCE_TOOLS/svn_apply_ignores.pl --apply
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aligngivenpath.cpp
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aligngivenpathsw.cpp
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aligntwomsas.cpp
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aligntwoprofs.cpp
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aln.cpp
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alpha.cpp
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alpha.h
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anchors.cpp
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bittraceback.cpp
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blosum62.cpp
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blosumla.cpp
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clust.cpp
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clust.h
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cluster.cpp
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cluster.h
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clustset.h
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clustsetdf.h
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clustsetmsa.h
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clwwt.cpp
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color.cpp
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cons.cpp
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diaglist.cpp
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diaglist.h
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diffobjscore.cpp
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diffpaths.cpp
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difftrees.cpp
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difftreese.cpp
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distcalc.cpp
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distcalc.h
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distfunc.cpp
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distfunc.h
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distpwkimura.cpp
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domuscle.cpp
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dosp.cpp
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dpregionlist.h
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dpreglist.cpp
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dpreglist.h
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drawtree.cpp
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edgelist.cpp
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edgelist.h
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enumopts.cpp
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enumopts.h
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enums.h
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enumtostr.cpp
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estring.cpp
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estring.h
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fasta2.cpp
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fasta.cpp
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fastclust.cpp
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fastdist.cpp
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fastdistjones.cpp
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fastdistkbit.cpp
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fastdistkmer.cpp
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fastdistmafft.cpp
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fastdistnuc.cpp
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fastscorepath2.cpp
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finddiags.cpp
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finddiagsn.cpp
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gapscoredimer.h
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glbalign352.cpp
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glbalign.cpp
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glbaligndiag.cpp
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glbalignla.cpp
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glbalignle.cpp
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glbalignns.cpp
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glbalignsimple.cpp
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glbalignsp.cpp
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glbalignspn.cpp
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glbalignss.cpp
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glbalndimer.cpp
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globals.cpp
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globalslinux.cpp
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globalsosx.cpp
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globalsother.cpp
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globalswin32.cpp
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gonnet.cpp
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gonnet.h
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gotowt.cpp
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henikoffweight.cpp
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henikoffweightpb.cpp
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html.cpp
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hydro.cpp
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intmath.cpp
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intmath.h
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local.cpp
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main.cpp
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makerootmsa.cpp
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makerootmsab.cpp
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maketree.cpp
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mhack.cpp
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mpam200.cpp
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msa2.cpp
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msa.cpp
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msa.h
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msadist.h
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msadistkimura.cpp
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msadistkimura.h
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msadistmafft.h
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msf.cpp
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muscle.cpp
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muscle.h
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muscleout.cpp
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nucmx.cpp
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nwdasimple2.cpp
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nwdasimple.cpp
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nwdasmall.cpp
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nwrec.cpp
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nwsmall.cpp
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objscore2.cpp
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objscore.cpp
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objscore.h
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objscoreda.cpp
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onexception.cpp
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options.cpp
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outweights.cpp
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pam200mafft.cpp
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params.cpp
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params.h
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phy2.cpp
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phy3.cpp
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phy4.cpp
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phy.cpp
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phyfromclust.cpp
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phyfromfile.cpp
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physeq.cpp
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phytofile.cpp
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posgap.cpp
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ppscore.cpp
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profdb.cpp
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profile.cpp
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profile.h
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profilefrommsa.cpp
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progalign.cpp
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progress.cpp
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progressivealign.cpp
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pwpath.cpp
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pwpath.h
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README.txt
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readmx.cpp
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realigndiffs.cpp
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realigndiffse.cpp
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refine.cpp
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refinehoriz.cpp
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refinesubfams.cpp
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refinetree.cpp
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refinetreee.cpp
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refinevert.cpp
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refinew.cpp
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releases.txt
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203 bytes
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savebest.cpp
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scoredist.cpp
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scoregaps.cpp
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scorehistory.cpp
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scorehistory.h
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508 bytes
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scorepp.cpp
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seq.cpp
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seq.h
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1.8 KB
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seqvect.cpp
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seqvect.h
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setblosumweights.cpp
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setgscweights.cpp
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setnewhandler.cpp
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612 bytes
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spfast.cpp
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sptest.cpp
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stabilize.cpp
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subfam.cpp
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subfams.cpp
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westram |
* partial merge from 'stable' into 'trunk'
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svnmods.h
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svnversion.h
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sw.cpp
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termgaps.cpp
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textfile.cpp
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textfile.h
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threewaywt.cpp
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timing.h
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tomhydro.cpp
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traceback.cpp
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tracebackopt.cpp
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tracebacksw.cpp
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tree.h
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treefrommsa.cpp
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types.h
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typetostr.cpp
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* fix potential buffer overflow (warned by gcc 7.5.0).
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unixio.h
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upgma2.cpp
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usage.cpp
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validateids.cpp
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version.txt
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vtml2.cpp
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writescorefile.cpp
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