#804 |
replace using regular expressions refuses to replace "nothing"
|
new
|
defect
|
critical
|
|
Library (other)
|
#850 |
merge tool sometimes does not merge sequence data
|
new
|
defect
|
critical
|
|
ARB_MERGE
|
#39 |
Generating new name when importing sequences - additional fields ignored?
|
new
|
defect
|
major
|
|
Import / Export
|
#59 |
crash when merging DBs with concatenated alignments
|
new
|
defect
|
major
|
|
ARB_NTREE
|
#86 |
undo after "destroy group" does not recover the group name; ARB crashes after a subsequent try to rename the group
|
new
|
defect
|
major
|
|
Library (DB)
|
#130 |
Add possibily to display tree horizontally flipped
|
new
|
enhancement
|
major
|
wishlist
|
Library (tree)
|
#143 |
Database versioning
|
new
|
enhancement
|
major
|
|
ARB_NTREE
|
#162 |
ARB crashes when transferring species or SAIs if the amount of alignemnt position is extended
|
new
|
defect
|
major
|
|
no idea
|
#164 |
No connection to name server possible if this has been started by someone else
|
new
|
enhancement
|
major
|
|
NameServer
|
#169 |
Feature Request: More Information in Message Boxes when problems with conflicting field types pop up
|
new
|
enhancement
|
major
|
|
no idea
|
#192 |
Nameserver not multiuser-capable
|
new
|
defect
|
major
|
|
NameServer
|
#217 |
Fix error handling in ARB
|
new
|
task
|
major
|
|
global
|
#227 |
AISC cant handle strings longer than 1024
|
new
|
task
|
major
|
|
Library (other)
|
#253 |
inconsistent distance matrix export formats in ARB
|
new
|
enhancement
|
major
|
arb7.x
|
ARB_DIST
|
#258 |
Rewrite CSV import
|
new
|
enhancement
|
major
|
wishlist
|
Import / Export
|
#322 |
undefined pt server breaks assert (crash in DEBUG)
|
new
|
defect
|
major
|
|
global
|
#352 |
Editing alignments extremely slow with large DB/tree
|
new
|
enhancement
|
major
|
|
ARB_EDIT4
|
#412 |
Increase EDIT4 sequence search mismatch limit
|
new
|
defect
|
major
|
arb7.x
|
ARB_EDIT4
|
#414 |
Editor crash on right click into sequence area
|
new
|
defect
|
major
|
|
ARB_EDIT4
|
#451 |
'Move groups..' changes root
|
new
|
defect
|
major
|
wishlist
|
ARB_NTREE
|
#452 |
'remove species from tree' is broken
|
new
|
defect
|
major
|
|
Library (DB)
|
#480 |
undo "delete tree" crashes arb
|
new
|
defect
|
major
|
|
Libraries (multi)
|
#512 |
Optimize 'Move groups' for speed
|
new
|
optimization
|
major
|
wishlist
|
ARB_NTREE
|
#554 |
provoking ARB fatal error does not cause termination
|
new
|
defect
|
major
|
arb7.x
|
no idea
|
#585 |
optimize database sequence compression
|
new
|
optimization
|
major
|
|
Library (DB)
|
#621 |
arb_export_rates crashes
|
new
|
defect
|
major
|
arb7.x
|
External_tools
|
#622 |
raxml 'rapid bootstrap analysis' does not import bootstrap values
|
new
|
defect
|
major
|
arb7.x
|
External_tools
|
#664 |
Problem DIsplay RNA3d
|
new
|
defect
|
major
|
|
ARB_RNA3D
|
#675 |
message are not processed in reasonable time
|
new
|
defect
|
major
|
arb7.x
|
no idea
|
#706 |
Condensed tree view
|
new
|
enhancement
|
major
|
wishlist
|
no idea
|
#734 |
add high level function to update (new) tree from existing tree
|
new
|
enhancement
|
major
|
wishlist
|
ARB_NTREE
|
#755 |
probe match shall support more types of "weak matches"
|
new
|
enhancement
|
major
|
wishlist
|
PT server
|
#767 |
tree importer fails to handle numeric group-names
|
new
|
defect
|
major
|
|
Import / Export
|
#776 |
arb crashes after import of (specific) trees
|
new
|
defect
|
major
|
|
no idea
|
#787 |
tree export/import cannot handle node-comment which are no bootstraps
|
new
|
defect
|
major
|
|
Libraries (multi)
|
#792 |
Move "marked groups only" selects wrong groups
|
new
|
defect
|
major
|
|
ARB_NTREE
|
#795 |
secedit crashes on startup (OSX only)
|
new
|
defect
|
major
|
|
ARB_SECEDIT
|
#809 |
drop support for 32-bit-version
|
new
|
optimization
|
major
|
|
global
|
#816 |
cleanup preinstalled import/export filters
|
new
|
task
|
major
|
|
Import / Export
|
#817 |
add memory buttons to search & query
|
new
|
enhancement
|
major
|
|
Usability
|
#821 |
embed clustal omega
|
new
|
task
|
major
|
wishlist
|
GDE
|
#822 |
arb_launcher fails to terminate w/o error state
|
new
|
issue
|
major
|
|
Usability
|
#29 |
probe match/design parameters
|
new
|
defect
|
normal
|
|
PT server
|
#61 |
Concatenated alignments
|
new
|
enhancement
|
normal
|
|
ARB_NTREE
|
#74 |
Remove menu poit Tools -> Network
|
new
|
enhancement
|
normal
|
|
ARB_NTREE
|
#83 |
Add information who add created/updated the PT-server
|
new
|
enhancement
|
normal
|
arb7.x
|
PT server
|
#97 |
Ctrl-cursor positions false
|
new
|
defect
|
normal
|
|
ARB_EDIT4
|
#109 |
Crashes sometimes when selecting with right mouse
|
new
|
defect
|
normal
|
|
ARB_EDIT4
|
#113 |
Allow to rename DB field
|
new
|
enhancement
|
normal
|
arb7.x
|
ARB_NTREE
|
#120 |
Treenames used as keys
|
new
|
enhancement
|
normal
|
|
Library (other)
|
#126 |
add faster checksum algorithm
|
new
|
enhancement
|
normal
|
|
no idea
|
#128 |
Add PhyML bootstrap option to the ARB menu
|
new
|
enhancement
|
normal
|
|
External_tools
|
#170 |
Feature request: Missing compression button in ARB Neighbour Joining
|
new
|
enhancement
|
normal
|
arb7.x
|
ARB_DIST
|
#173 |
field conversion in merge tool
|
new
|
enhancement
|
normal
|
|
ARB_NTREE
|
#188 |
remove hardcoded limit in ACI
|
new
|
defect
|
normal
|
|
no idea
|
#191 |
Some files in genbank format introduce multiple entries in DB field "nuc_nr" when imported with filter "genbank_silva.ift"
|
new
|
defect
|
normal
|
|
Import / Export
|
#205 |
enhance multiprobing interface
|
new
|
enhancement
|
normal
|
|
ARB_NTREE
|
#206 |
multi selection boxes
|
new
|
enhancement
|
normal
|
|
Library (GUI)
|
#207 |
bootstrap transfer
|
new
|
enhancement
|
normal
|
|
ARB_NTREE
|
#208 |
Filter RAxML output
|
new
|
defect
|
normal
|
|
External_tools
|
#212 |
Feature request: Search next relatives of Listed Species
|
new
|
enhancement
|
normal
|
arb7.x
|
no idea
|
#229 |
sequence import number not reset
|
new
|
defect
|
normal
|
|
Import / Export
|
#245 |
ARB Genbank export for nucleotides
|
new
|
defect
|
normal
|
|
Import / Export
|
#250 |
import/export for secondary structures
|
new
|
task
|
normal
|
|
ARB_NTREE
|
#252 |
Create species from consensus fails under certain conditions
|
new
|
defect
|
normal
|
|
no idea
|
#254 |
fold/unfold all groups in edit4
|
new
|
enhancement
|
normal
|
arb7.x
|
ARB_EDIT4
|
#255 |
PHYML bootstrap value bug
|
new
|
defect
|
normal
|
|
no idea
|
#256 |
Fix multiple tree view
|
new
|
misbehavior
|
normal
|
arb7.x
|
ARB_NTREE
|
#257 |
Horizontal Split-View in ED4
|
new
|
enhancement
|
normal
|
|
ARB_EDIT4
|
#260 |
built PT server from marked
|
new
|
enhancement
|
normal
|
|
PT server
|
#262 |
Simplify resolving field-type conflicts
|
new
|
enhancement
|
normal
|
|
ARB_MERGE
|
#271 |
RFC: replace static member CBs with extern C proxies?
|
new
|
task
|
normal
|
|
global
|
#282 |
import from calc sheet: allow float import
|
new
|
enhancement
|
normal
|
|
Import / Export
|
#285 |
Help text can be modified
|
new
|
enhancement
|
normal
|
|
Library (GUI)
|
#340 |
allow alternative filter for 'ecoli-position'
|
new
|
enhancement
|
normal
|
|
no idea
|
#342 |
remove clustal?!
|
new
|
task
|
normal
|
|
External_tools
|
#344 |
GDE alignment optional ECOLI mapping
|
new
|
enhancement
|
normal
|
|
External_tools
|
#345 |
copy alignment (only marked)
|
new
|
enhancement
|
normal
|
|
ARB_NTREE
|
#346 |
copy sequence to sai
|
new
|
enhancement
|
normal
|
|
ARB_NTREE
|
#378 |
load marked sequences, behaves weird if group "More Sequences" is folded
|
new
|
defect
|
normal
|
arb7.x
|
ARB_EDIT4
|
#390 |
add support for color profiles in AW_preset
|
new
|
enhancement
|
normal
|
|
Library (GUI)
|
#418 |
Allow to "link" protein and DNA alignment
|
new
|
enhancement
|
normal
|
wishlist
|
Library (DB)
|
#436 |
arb looses GUI when unable to acquire socket
|
new
|
defect
|
normal
|
|
no idea
|
#446 |
Topology sorting shall consider multifurcations
|
new
|
defect
|
normal
|
|
ARB_NTREE
|
#447 |
update phyml again
|
new
|
defect
|
normal
|
|
no idea
|
#454 |
Allow to combine multiple transactions into one undo-step
|
new
|
misbehavior
|
normal
|
|
Library (DB)
|
#461 |
Allow to specify name of tree generated by external tool
|
new
|
enhancement
|
normal
|
wishlist
|
External_tools
|
#462 |
Allow to use arb_consensus_tree instead of consense
|
new
|
enhancement
|
normal
|
|
External_tools
|
#465 |
tree selection box in (RAxML) GDE window sometimes points to missing tree
|
new
|
defect
|
normal
|
|
External_tools
|
#471 |
Unknown action 'SEARCH_NEXT_RELATIVE_OF_SELECTED/CURR_PT_SERVER' in macro
|
new
|
defect
|
normal
|
|
no idea
|
#475 |
alignment admin should also modify SAIs
|
new
|
enhancement
|
normal
|
|
ARB_NTREE
|
#493 |
delete field + undo unmarks species
|
new
|
defect
|
normal
|
|
no idea
|
#495 |
fix NJ algorithm (unstable)
|
new
|
defect
|
normal
|
|
ARB_DIST
|
#502 |
ARB_DIST matrix contains wrong/bad values in pathological cases
|
new
|
defect
|
normal
|
|
ARB_DIST
|
#503 |
Add ability to detach user masks
|
new
|
enhancement
|
normal
|
proposals
|
no idea
|
#514 |
revise menu structure and names of base conceptual objects
|
new
|
enhancement
|
normal
|
|
ARB_NTREE
|
#515 |
rewrite installer
|
new
|
enhancement
|
normal
|
|
Usability
|
#549 |
editor crashes if no SAI selected for column stat
|
new
|
defect
|
normal
|
arb7.x
|
ARB_EDIT4
|
#560 |
add custom sort criteria to search&query
|
new
|
enhancement
|
normal
|
|
Library (other)
|
#568 |
improve merging DBs with mismatching field types
|
new
|
enhancement
|
normal
|
arb7.x
|
ARB_MERGE
|