#7 |
Change of compression mode should re-center cursor
|
westram
|
blocker
|
|
ARB_EDIT4
|
|
#81 |
Status meldung in merge -> rename species seltsam
|
westram
|
blocker
|
|
no idea
|
|
#394 |
write a fast fixed font layout routine for editor
|
devel
|
critical
|
|
Library (GUI)
|
gtkport
|
#23 |
Rewrite genome importer
|
westram
|
major
|
|
ARB_NTREE
|
|
#35 |
Concept for new identical sequences from different habitats/locations/samples needed
|
devel
|
major
|
|
no idea
|
SVN
|
#45 |
Check for alignment changes
|
westram
|
major
|
|
ARB_NTREE
|
|
#52 |
Open species information from within Editor
|
westram
|
major
|
arb7.0
|
ARB_EDIT4
|
|
#65 |
tree comparison using consense
|
westram
|
major
|
arb6
|
External_tools
|
SVN
|
#67 |
Remove unneeded Helix entries in top area
|
westram
|
major
|
|
ARB_EDIT4
|
SVN
|
#78 |
Versioning - statt Datum jetzt Version 3.0
|
devel
|
major
|
|
no idea
|
|
#115 |
Block family search for fast-aligner
|
devel
|
major
|
|
ARB_EDIT4
|
|
#116 |
Find clusters of similar sequences
|
westram
|
major
|
|
ARB_DIST
|
|
#119 |
Sort query results by distance
|
devel
|
major
|
|
ARB_NTREE
|
SVN
|
#150 |
Rejection of sequences in bootstrapped ARB NJ trees is confusing
|
devel
|
major
|
|
no idea
|
release_20071207
|
#180 |
ARB NeighbourJoining, Sequence Compression Option is missing
|
devel
|
major
|
|
ARB_DIST
|
SVN
|
#182 |
ARB Neighbour Joining, remove reduction of input sequences when bootstrapping
|
devel
|
major
|
|
ARB_DIST
|
SVN
|
#197 |
Add default for additional field to nameserver definition
|
devel
|
major
|
|
NameServer
|
|
#199 |
Remove some inconsistencies in grey menu points
|
westram
|
major
|
|
ARB_NTREE
|
SVN
|
#209 |
optionally skip numbers from xfig tree-export
|
westram
|
major
|
arb7.0
|
Library (GUI)
|
SVN
|
#261 |
Flag sequences (in editor).
|
westram
|
major
|
arb7.0
|
ARB_EDIT4
|
SVN
|
#263 |
User Import/Export filters
|
westram
|
major
|
arb6
|
Import / Export
|
SVN
|
#456 |
Need ability to perform some task with all members of a selection list
|
westram
|
major
|
arb6
|
Libraries (multi)
|
SVN
|
#501 |
Protect user from saving corrupted DBs
|
westram
|
major
|
arb6
|
Library (DB)
|
SVN
|
#562 |
Allow to define "field transfer sets" in merge-tool / importer / exporter
|
westram
|
major
|
arb7.0
|
ARB_MERGE
|
SVN
|
#604 |
arb_parsimony should support multi cores
|
westram
|
major
|
wishlist
|
ARB_PARSIMONY
|
SVN
|
#652 |
implement search module for groups
|
westram
|
major
|
arb7.0
|
ARB_NTREE
|
SVN
|
#653 |
detect average sequence distance for all groups of a tree
|
westram
|
major
|
arb7.0
|
ARB_NTREE
|
SVN
|
#681 |
Provide maximum-likelihood add-to-tree
|
westram
|
major
|
arb7.0
|
GDE
|
|
#682 |
Add color-ranges to customizable colors
|
westram
|
major
|
arb7.0
|
Library (GUI)
|
SVN
|
#683 |
Synchronized scrolling of multiple tree views
|
westram
|
major
|
arb7.0
|
Library (tree)
|
|
#685 |
Add drop-down-list widget type to GUI-language ("user masks")
|
devel
|
major
|
|
no idea
|
SVN
|
#691 |
Simplify import/export (filter) configuration
|
westram
|
major
|
arb7.0
|
Import / Export
|
SVN
|
#730 |
implement SAI calculator
|
westram
|
major
|
arb7.0
|
ARB_NTREE
|
SVN
|
#756 |
Allow context-specific extension of ACI language
|
westram
|
major
|
|
Library (DB)
|
SVN
|
#825 |
merge via fts shall allow to skip alignment data
|
westram
|
major
|
|
ARB_MERGE
|
SVN
|
#846 |
add functionality to split alignments
|
westram
|
major
|
|
ARB_NTREE
|
SVN
|
#854 |
detect helix regions with bad alignment
|
westram
|
major
|
|
ARB_EDIT4
|
SVN
|
#856 |
planned user interaction during macro playback
|
westram
|
major
|
|
ARB_NTREE
|
SVN
|
#863 |
allow to enumerate duplicated groups
|
westram
|
major
|
|
ARB_NTREE
|
SVN
|
#11 |
PT_server selection lists
|
westram
|
normal
|
|
no idea
|
|
#18 |
New alignment type for custom sequence-data (non RNA-DNA-AA)
|
westram
|
normal
|
|
no idea
|
|
#21 |
Generating new names for big databases is much too slow
|
westram
|
normal
|
|
NameServer
|
SVN
|
#63 |
Macro recording/playback for clients
|
westram
|
normal
|
|
no idea
|
|
#73 |
Fit on X pages is strange
|
devel
|
normal
|
|
ARB_NTREE
|
|
#77 |
Remove design primers
|
devel
|
normal
|
|
ARB_NTREE
|
|
#91 |
Flickering (multiple refreshes) when resizing an ARB window
|
baderk
|
normal
|
|
no idea
|
SVN
|
#118 |
Display number of contained/marked species for groups
|
westram
|
normal
|
arb7.0
|
ARB_NTREE
|
SVN
|
#121 |
History for simple string input
|
devel
|
normal
|
|
no idea
|
|
#127 |
Make discarding of sequences when running ARB Neighbour joining with Bootstraps optional
|
devel
|
normal
|
|
no idea
|
SVN
|
#137 |
Feature Request - Link Editor with Sepcies information information
|
devel
|
normal
|
|
ARB_EDIT4
|
stable-2007
|
#142 |
Allow unlimited number of NDS fields in GUI and export
|
westram
|
normal
|
|
no idea
|
|
#147 |
Feature request for Search next neighbors in Search and Query
|
westram
|
normal
|
|
no idea
|
SVN
|
#158 |
Missing information about filter used when building trees with RAXML
|
westram
|
normal
|
|
ARB_NTREE
|
SVN
|
#175 |
ARB_EDIT4 block selection/deselection
|
westram
|
normal
|
|
ARB_EDIT4
|
|
#185 |
PhyML, bootstrap option missing
|
devel
|
normal
|
|
no idea
|
SVN
|
#194 |
Import from ARB-database
|
westram
|
normal
|
|
ARB_NTREE
|
|
#204 |
Load probe list
|
devel
|
normal
|
|
ARB_NTREE
|
SVN
|
#213 |
generalize ACI to work with groups
|
westram
|
normal
|
|
Library (DB)
|
SVN
|
#214 |
In 'Set Parsimony Options' 'Weights' should be grey in novice mode
|
westram
|
normal
|
|
ARB_PARSIMONY
|
arb_5.0
|
#223 |
pt-server final "ok" message not showing via pipe
|
devel
|
normal
|
|
PT server
|
|
#226 |
per user import/export filters
|
devel
|
normal
|
|
Import / Export
|
SVN
|
#228 |
partial fast alignment vs "partial relatives"
|
westram
|
normal
|
|
ARB_EDIT4
|
|
#236 |
Add GDE menus for more popular alignment/tree reconstruction tools
|
devel
|
normal
|
|
no idea
|
|
#238 |
version information in libARBDB
|
devel
|
normal
|
|
Libraries (multi)
|
SVN
|
#259 |
detect clusters in tree
|
westram
|
normal
|
arb7.0
|
ARB_DIST
|
SVN
|
#273 |
implement "robust" range-checks
|
devel
|
normal
|
|
Library (GUI)
|
gtkport
|
#275 |
add padding for dialogs
|
epruesse
|
normal
|
|
no idea
|
gtkport
|
#279 |
show file name in window title
|
devel
|
normal
|
|
ARB_NTREE
|
gtkport
|
#280 |
implement multi-column multi-select NDS tables
|
epruesse
|
normal
|
|
Usability
|
gtkport
|
#356 |
markup support (italics, bold, ...)
|
devel
|
normal
|
|
Usability
|
gtkport
|
#361 |
clean up toolbar in NT and EDIT
|
devel
|
normal
|
|
Usability
|
gtkport
|
#362 |
save database from editor
|
westram
|
normal
|
arb7.0
|
Usability
|
SVN
|
#363 |
use system file browser instead of arb's own
|
devel
|
normal
|
|
Usability
|
gtkport
|
#365 |
edit4 launch icon not intuitive
|
westram
|
normal
|
arb7.0
|
Usability
|
SVN
|
#366 |
make window_simple auto-scrolling
|
devel
|
normal
|
|
Usability
|
gtkport
|
#384 |
allow enabling/disabling antialiasing
|
epruesse
|
normal
|
|
Library (GUI)
|
gtkport
|
#385 |
handle dragging properly
|
devel
|
normal
|
|
Library (GUI)
|
gtkport
|
#391 |
add bug report generator to arb_launch
|
westram
|
normal
|
arb6
|
no idea
|
SVN
|
#411 |
Allow to specify any number of mismatches for probe match
|
westram
|
normal
|
|
ARB_NTREE
|
SVN
|
#417 |
Allow to create multifurcated trees
|
westram
|
normal
|
arb6
|
ARB_NTREE
|
SVN
|
#420 |
Implement DB callbacks bound to hierarchy
|
westram
|
normal
|
arb7.0
|
Library (DB)
|
SVN
|
#445 |
Add new ways to sort topologies
|
westram
|
normal
|
arb6
|
ARB_NTREE
|
|
#449 |
Add function to synchronize roots of two trees
|
westram
|
normal
|
arb7.0
|
ARB_NTREE
|
SVN
|
#450 |
Improve 'Move node info'
|
westram
|
normal
|
|
ARB_NTREE
|
SVN
|
#458 |
extract distances from existing tree into distance matrix
|
westram
|
normal
|
|
ARB_DIST
|
SVN
|
#484 |
support for user-specific gde-menu
|
westram
|
normal
|
arb6
|
External_tools
|
SVN
|
#487 |
Update to RAxML 8.0.x and build HW optimized versions
|
epruesse
|
normal
|
arb7.0
|
External_tools
|
SVN
|
#491 |
refactor AW_file.cxx
|
|
normal
|
|
no idea
|
gtkport
|
#513 |
move Tree->Mark Duplicates to Species->Mark
|
westram
|
normal
|
|
ARB_NTREE
|
SVN
|
#517 |
Provide easier tree member comparison
|
devel
|
normal
|
arb7.0
|
ARB_NTREE
|
SVN
|
#523 |
add more build targets (32bit, Debian, ...)
|
devel
|
normal
|
|
no idea
|
|
#547 |
crash reporter assumes glibc in /lib
|
epruesse
|
normal
|
|
no idea
|
SVN
|
#578 |
add option to directly draw branches from father to son
|
westram
|
normal
|
arb7.0
|
Library (other)
|
SVN
|
#590 |
add progress while loading database
|
epruesse
|
normal
|
arb7.0
|
Usability
|
arb-6.0
|
#607 |
improve species selection (=editor configurations)
|
westram
|
normal
|
arb7.0
|
ARB_NTREE
|
|
#614 |
Tweak display of (bootstrap) support values
|
westram
|
normal
|
arb7.0
|
ARB_NTREE
|
|
#630 |
allow to calculate with specified precision in ACI
|
westram
|
normal
|
|
Library (DB)
|
|
#639 |
parsimony quick-add w/o GUI
|
westram
|
normal
|
|
ARB_PARSIMONY
|
SVN
|
#647 |
add config-managers (arbwide)
|
westram
|
normal
|
arb7.0
|
global
|
SVN
|
#651 |
allow to mark species by topology
|
westram
|
normal
|
arb7.0
|
ARB_NTREE
|
SVN
|